Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 PCDHB18P-201ENST00000524813 2368 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 EGFEM1P-202ENST00000431685 1563 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 AC116353.5-201ENST00000638148 1699 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.16□□□□□ -0.3
HOXD3P31249 CNN2P11-201ENST00000429351 262 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXD3P31249 HCG4B-203ENST00000450128 991 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.16□□□□□ -0.3
HOXD3P31249 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 C20orf181-201ENST00000623918 480 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HOXD3P31249 PP12613-201ENST00000424958 2230 ntBASIC13.16□□□□□ -0.3
HOXD3P31249 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD3P31249 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD3P31249 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD3P31249 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
HOXD3P31249 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HOXD3P31249 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.15□□□□□ -0.3
HOXD3P31249 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXD3P31249 MRPL20P1-201ENST00000400819 433 ntBASIC13.15□□□□□ -0.3
HOXD3P31249 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.15□□□□□ -0.3
HOXD3P31249 YBX1P5-201ENST00000509441 847 ntBASIC13.15□□□□□ -0.3
HOXD3P31249 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 AC106028.4-201ENST00000614509 607 ntBASIC13.15□□□□□ -0.3
HOXD3P31249 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HOXD3P31249 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXD3P31249 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD3P31249 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXD3P31249 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXD3P31249 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC13.14□□□□□ -0.31
HOXD3P31249 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HOXD3P31249 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXD3P31249 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
HOXD3P31249 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXD3P31249 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms