Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC20.05■□□□□ 0.8
HMGB1P09429 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB1P09429 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB1P09429 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HMGB1P09429 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.05■□□□□ 0.8
HMGB1P09429 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
HMGB1P09429 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.04■□□□□ 0.8
HMGB1P09429 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.04■□□□□ 0.8
HMGB1P09429 AC079781.3-201ENST00000449110 356 ntBASIC20.04■□□□□ 0.8
HMGB1P09429 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.04■□□□□ 0.8
HMGB1P09429 AC008667.4-201ENST00000607370 168 ntBASIC20.04■□□□□ 0.8
HMGB1P09429 REXO1L3P-201ENST00000622202 1288 ntBASIC20.04■□□□□ 0.8
HMGB1P09429 AL139011.1-202ENST00000642063 584 ntBASIC20.04■□□□□ 0.8
HMGB1P09429 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
HMGB1P09429 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HMGB1P09429 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB1P09429 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
HMGB1P09429 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HMGB1P09429 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 AC006277.1-201ENST00000624348 1610 ntBASIC20.03■□□□□ 0.8
HMGB1P09429 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB1P09429 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.03■□□□□ 0.8
HMGB1P09429 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB1P09429 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGB1P09429 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB1P09429 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.03■□□□□ 0.8
HMGB1P09429 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.03■□□□□ 0.8
HMGB1P09429 AL356488.2-201ENST00000602755 427 ntBASIC20.03■□□□□ 0.8
HMGB1P09429 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB1P09429 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB1P09429 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.03■□□□□ 0.8
HMGB1P09429 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.03■□□□□ 0.8
HMGB1P09429 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.03■□□□□ 0.8
HMGB1P09429 OR6D1P-203ENST00000641209 4860 ntBASIC20.03■□□□□ 0.8
HMGB1P09429 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HMGB1P09429 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGB1P09429 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HMGB1P09429 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.02■□□□□ 0.8
HMGB1P09429 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.02■□□□□ 0.8
HMGB1P09429 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
HMGB1P09429 HLA-J-202ENST00000469281 1241 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 IGHV3-65-201ENST00000523210 341 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 AL160237.2-201ENST00000556165 472 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGB1P09429 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.02■□□□□ 0.8
HMGB1P09429 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HMGB1P09429 AC104692.2-201ENST00000603054 253 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 AL031008.1-201ENST00000619963 541 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HMGB1P09429 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC20.02■□□□□ 0.8
HMGB1P09429 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HMGB1P09429 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB1P09429 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HMGB1P09429 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
HMGB1P09429 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
HMGB1P09429 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.02■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms