Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 PCDHB17P-201ENST00000539533 2393 ntBASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.3■□□□□ 0.36
LRRC40Q9H9A6 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 AC243591.1-201ENST00000452967 1364 ntBASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 AC139887.3-201ENST00000568585 713 ntBASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.29■□□□□ 0.36
LRRC40Q9H9A6 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 AKR1C7P-201ENST00000305623 895 ntBASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 CLEC4GP1-201ENST00000596555 870 ntBASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 MTDHP4-201ENST00000600287 670 ntBASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TERC-201ENST00000602385 541 ntBASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRRC40Q9H9A6 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRRC40Q9H9A6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms