Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MSX2P35548 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
MSX2P35548 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
MSX2P35548 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.3■□□□□ 0.2
MSX2P35548 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
MSX2P35548 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.3■□□□□ 0.2
MSX2P35548 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.3■□□□□ 0.2
MSX2P35548 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
MSX2P35548 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.3■□□□□ 0.2
MSX2P35548 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
MSX2P35548 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
MSX2P35548 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
MSX2P35548 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 RASA4DP-201ENST00000460726 1199 ntBASIC16.29■□□□□ 0.2
MSX2P35548 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 AL512604.3-201ENST00000569583 964 ntBASIC16.29■□□□□ 0.2
MSX2P35548 MIR4785-201ENST00000585005 73 ntBASIC16.29■□□□□ 0.2
MSX2P35548 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.29■□□□□ 0.2
MSX2P35548 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
MSX2P35548 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
MSX2P35548 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
MSX2P35548 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 AC092384.3-202ENST00000564646 2873 ntBASIC16.28■□□□□ 0.2
MSX2P35548 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.28■□□□□ 0.2
MSX2P35548 AL136379.1-201ENST00000623471 2642 ntBASIC16.28■□□□□ 0.2
MSX2P35548 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 ECEL1P3-201ENST00000427961 737 ntBASIC16.28■□□□□ 0.2
MSX2P35548 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 TSPY15P-201ENST00000457163 923 ntBASIC16.28■□□□□ 0.2
MSX2P35548 IGHV3-52-201ENST00000519770 353 ntBASIC16.28■□□□□ 0.2
MSX2P35548 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.28■□□□□ 0.2
MSX2P35548 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.28■□□□□ 0.2
MSX2P35548 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.28■□□□□ 0.2
MSX2P35548 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.28■□□□□ 0.2
MSX2P35548 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
MSX2P35548 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.28■□□□□ 0.2
MSX2P35548 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
MSX2P35548 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms