Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 AC003669.1-201ENST00000334569 611 ntBASIC14.3□□□□□ -0.12
ABCA1O95477 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.3□□□□□ -0.12
ABCA1O95477 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 AP001059.3-201ENST00000619053 235 ntBASIC14.3□□□□□ -0.12
ABCA1O95477 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.3□□□□□ -0.12
ABCA1O95477 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
ABCA1O95477 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.3□□□□□ -0.12
ABCA1O95477 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA1O95477 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.29□□□□□ -0.12
ABCA1O95477 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
ABCA1O95477 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.29□□□□□ -0.12
ABCA1O95477 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
ABCA1O95477 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA1O95477 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
ABCA1O95477 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.29□□□□□ -0.12
ABCA1O95477 AC005225.4-201ENST00000557330 545 ntBASIC14.29□□□□□ -0.12
ABCA1O95477 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.29□□□□□ -0.12
ABCA1O95477 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
ABCA1O95477 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.29□□□□□ -0.12
ABCA1O95477 AF228730.6-201ENST00000641497 218 ntBASIC14.29□□□□□ -0.12
ABCA1O95477 AC084121.3-201ENST00000641716 218 ntBASIC14.29□□□□□ -0.12
ABCA1O95477 AC105233.6-201ENST00000642093 218 ntBASIC14.29□□□□□ -0.12
ABCA1O95477 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA1O95477 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA1O95477 AC092919.2-201ENST00000623631 1645 ntBASIC14.28□□□□□ -0.12
ABCA1O95477 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.28□□□□□ -0.12
ABCA1O95477 AC006116.8-202ENST00000587620 1550 ntBASIC14.28□□□□□ -0.12
ABCA1O95477 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.28□□□□□ -0.12
ABCA1O95477 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
ABCA1O95477 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
ABCA1O95477 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms