Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC092364.2-201ENST00000596710 2692 ntBASIC16.32■□□□□ 0.2
PDLIM1O00151 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PDLIM1O00151 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM1O00151 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM1O00151 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM1O00151 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PDLIM1O00151 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PDLIM1O00151 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PDLIM1O00151 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
PDLIM1O00151 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
PDLIM1O00151 SPDYE15P-201ENST00000424157 909 ntBASIC16.31■□□□□ 0.2
PDLIM1O00151 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 KRT18P35-201ENST00000510488 1269 ntBASIC16.31■□□□□ 0.2
PDLIM1O00151 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.31■□□□□ 0.2
PDLIM1O00151 MIR3917-201ENST00000580971 93 ntBASIC16.31■□□□□ 0.2
PDLIM1O00151 AL445228.2-201ENST00000605589 952 ntBASIC16.31■□□□□ 0.2
PDLIM1O00151 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.31■□□□□ 0.2
PDLIM1O00151 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PDLIM1O00151 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
PDLIM1O00151 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.31■□□□□ 0.2
PDLIM1O00151 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PDLIM1O00151 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM1O00151 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.3■□□□□ 0.2
PDLIM1O00151 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 AC092647.4-201ENST00000457211 535 ntBASIC16.3■□□□□ 0.2
PDLIM1O00151 RASA4DP-201ENST00000460726 1199 ntBASIC16.3■□□□□ 0.2
PDLIM1O00151 AC034232.1-201ENST00000506026 1064 ntBASIC16.3■□□□□ 0.2
PDLIM1O00151 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.3■□□□□ 0.2
PDLIM1O00151 HYMAI.1-201ENST00000620949 238 ntBASIC16.3■□□□□ 0.2
PDLIM1O00151 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM1O00151 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.3■□□□□ 0.2
PDLIM1O00151 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PDLIM1O00151 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM1O00151 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
PDLIM1O00151 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PDLIM1O00151 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM1O00151 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.29■□□□□ 0.2
PDLIM1O00151 AL122018.1-201ENST00000446607 2310 ntBASIC16.29■□□□□ 0.2
PDLIM1O00151 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PDLIM1O00151 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PDLIM1O00151 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PDLIM1O00151 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PDLIM1O00151 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms