Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 CACNA1C-213ENST00000399629 6562 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 COL19A1-205ENST00000620364 6233 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
CHKB-CPT1BH3BT56 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 NOL4L-203ENST00000359676 5991 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ADCY1-201ENST00000297323 12503 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CALM3-202ENST00000391918 702 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AC010141.2-201ENST00000452426 721 ntBASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CD44-222ENST00000526025 1052 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AC133561.4-201ENST00000566112 224 ntBASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PDXK-209ENST00000467908 7194 ntTSL 3 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 NAV2-204ENST00000396087 7882 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 AC116351.2-201ENST00000606540 1585 ntBASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TNN-203ENST00000622870 3719 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 MEX3B-202ENST00000558133 4333 ntBASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 VILL-207ENST00000465644 1857 ntTSL 5 BASIC9.45□□□□□ -0.9
CHKB-CPT1BH3BT56 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
CHKB-CPT1BH3BT56 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms