RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 DCAF8L2P0C7V8 631 aa19.34■□□□□ 0.69
PTPN4-201ENST00000263708 PELP1Q8IZL8 1130 aaKnown RBP18.56■□□□□ 0.56
PTPN4-201ENST00000263708 EHMT2Q96KQ7 1210 aa18.22■□□□□ 0.51
PTPN4-201ENST00000263708 SUPT5HO00267 1087 aaKnown RBP18.05■□□□□ 0.48
PTPN4-201ENST00000263708 ERICH6Q7L0X2 663 aa18■□□□□ 0.47
PTPN4-201ENST00000263708 APLP2Q06481 763 aa17.83■□□□□ 0.45
PTPN4-201ENST00000263708 CCER1Q8TC90 406 aaPredicted RBP17.73■□□□□ 0.43
PTPN4-201ENST00000263708 FAM9AQ8IZU1 332 aaPredicted RBP17.71■□□□□ 0.43
PTPN4-201ENST00000263708 TTBK1Q5TCY1 1321 aaPredicted RBP17.63■□□□□ 0.41
PTPN4-201ENST00000263708 SHROOM4Q9ULL8 1493 aa17.55■□□□□ 0.4
PTPN4-201ENST00000263708 MYT1Q01538 1121 aa17.45■□□□□ 0.38
PTPN4-201ENST00000263708 RANGAP1P46060 587 aaPredicted RBP17.35■□□□□ 0.37
PTPN4-201ENST00000263708 ATP1B4Q9UN42 357 aaPredicted RBP17.32■□□□□ 0.36
PTPN4-201ENST00000263708 CENPBP07199 599 aaPredicted RBP17.31■□□□□ 0.36
PTPN4-201ENST00000263708 PCGF6Q9BYE7 350 aa17.28■□□□□ 0.36
PTPN4-201ENST00000263708 NEFLP07196 543 aa17.25■□□□□ 0.35
PTPN4-201ENST00000263708 DAXXQ9UER7 740 aaPredicted RBP17.15■□□□□ 0.34
PTPN4-201ENST00000263708 YTHDC1Q96MU7 727 aaKnown RBP17.1■□□□□ 0.33
PTPN4-201ENST00000263708 MYT1LQ9UL68 1186 aa16.9■□□□□ 0.3
PTPN4-201ENST00000263708 POLR3GLQ9BT43 218 aa16.86■□□□□ 0.29
PTPN4-201ENST00000263708 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
PTPN4-201ENST00000263708 CHIC1Q5VXU3 224 aa16.8■□□□□ 0.28
PTPN4-201ENST00000263708 UBTFP17480 764 aaKnown RBP16.74■□□□□ 0.27
PTPN4-201ENST00000263708 SLC4A1APQ9BWU0 796 aaKnown RBP16.73■□□□□ 0.27
PTPN4-201ENST00000263708 CNGB1Q14028 1251 aaPredicted RBP16.72■□□□□ 0.27
PTPN4-201ENST00000263708 ZNF316A6NFI3 1004 aaPredicted RBP16.7■□□□□ 0.26
PTPN4-201ENST00000263708 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
PTPN4-201ENST00000263708 CLSPNQ9HAW4 1339 aa16.61■□□□□ 0.25
PTPN4-201ENST00000263708 TRIM41Q8WV44 630 aa16.59■□□□□ 0.25
PTPN4-201ENST00000263708 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.56■□□□□ 0.24
PTPN4-201ENST00000263708 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
PTPN4-201ENST00000263708 RTL5Q5HYW3 569 aaPredicted RBP16.53■□□□□ 0.24
PTPN4-201ENST00000263708 PPARGC1BQ86YN6 1023 aaKnown RBP16.52■□□□□ 0.23
PTPN4-201ENST00000263708 ITGAEP38570 1179 aa16.48■□□□□ 0.23
PTPN4-201ENST00000263708 SLC24A1O60721 1099 aa16.33■□□□□ 0.21
PTPN4-201ENST00000263708 BCL11AQ9H165 835 aa16.33■□□□□ 0.2
PTPN4-201ENST00000263708 ZBTB47Q9UFB7 747 aaPredicted RBP16.28■□□□□ 0.2
PTPN4-201ENST00000263708 CANXP27824 592 aaKnown RBP16.05■□□□□ 0.16
PTPN4-201ENST00000263708 TRIM26Q12899 539 aaPredicted RBP16.01■□□□□ 0.15
PTPN4-201ENST00000263708 BCANQ96GW7 911 aa16■□□□□ 0.15
PTPN4-201ENST00000263708 HRCP23327 699 aa15.98■□□□□ 0.15
PTPN4-201ENST00000263708 TRIM52Q96A61 297 aa15.93■□□□□ 0.14
PTPN4-201ENST00000263708 ZNF326Q5BKZ1 582 aaKnown RBP15.92■□□□□ 0.14
PTPN4-201ENST00000263708 FAM50AQ14320 339 aaKnown RBP15.91■□□□□ 0.14
PTPN4-201ENST00000263708 NEFMP07197 916 aa15.9■□□□□ 0.14
PTPN4-201ENST00000263708 CDK11AQ9UQ88 783 aaPredicted RBP15.89■□□□□ 0.13
PTPN4-201ENST00000263708 ANP32BQ92688 251 aaKnown RBP15.85■□□□□ 0.13
PTPN4-201ENST00000263708 NEUROD1Q13562 356 aa15.85■□□□□ 0.13
PTPN4-201ENST00000263708 EIF5BO60841 1220 aaKnown RBP15.84■□□□□ 0.13
PTPN4-201ENST00000263708 DIEXFQ68CQ4 756 aaKnown RBP15.81■□□□□ 0.12
PTPN4-201ENST00000263708 HSP90AA1P07900 732 aaKnown RBP15.79■□□□□ 0.12
PTPN4-201ENST00000263708 NPM2Q86SE8 214 aaKnown RBP15.77■□□□□ 0.12
PTPN4-201ENST00000263708 ANP32CO43423 234 aa15.74■□□□□ 0.11
PTPN4-201ENST00000263708 ANP32AP39687 249 aaKnown RBP15.73■□□□□ 0.11
PTPN4-201ENST00000263708 CDK11BP21127 795 aaKnown RBP15.72■□□□□ 0.11
PTPN4-201ENST00000263708 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
PTPN4-201ENST00000263708 GLIPR1L2Q4G1C9 344 aa15.62■□□□□ 0.09
PTPN4-201ENST00000263708 LOC105371045A0A1W2PR82 267 aa15.6■□□□□ 0.09
PTPN4-201ENST00000263708 ARXQ96QS3 562 aa15.6■□□□□ 0.09
PTPN4-201ENST00000263708 FBLN2P98095 1184 aa15.58■□□□□ 0.08
PTPN4-201ENST00000263708 A0A0G2JS52 829 aa15.57■□□□□ 0.08
PTPN4-201ENST00000263708 GTF3C3Q9Y5Q9 886 aa15.56■□□□□ 0.08
PTPN4-201ENST00000263708 UPF2Q9HAU5 1272 aaKnown RBP15.55■□□□□ 0.08
PTPN4-201ENST00000263708 ESF1Q9H501 851 aaKnown RBP15.54■□□□□ 0.08
PTPN4-201ENST00000263708 SCAF1Q9H7N4 1312 aaKnown RBP15.52■□□□□ 0.07
PTPN4-201ENST00000263708 TULP1O00294 542 aaPredicted RBP15.5■□□□□ 0.07
PTPN4-201ENST00000263708 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
PTPN4-201ENST00000263708 ARID3CA6NKF2 412 aa15.43■□□□□ 0.06
PTPN4-201ENST00000263708 CHGAP10645 457 aaKnown RBP15.4■□□□□ 0.06
PTPN4-201ENST00000263708 NBR1Q14596 966 aa15.39■□□□□ 0.05
PTPN4-201ENST00000263708 ZNF777Q9ULD5 760 aaPredicted RBP15.35■□□□□ 0.05
PTPN4-201ENST00000263708 PLEKHG5O94827 1062 aa15.34■□□□□ 0.05
PTPN4-201ENST00000263708 SALL2Q9Y467 1007 aaPredicted RBP15.33■□□□□ 0.04
PTPN4-201ENST00000263708 NCBP3Q53F19 620 aaKnown RBP15.33■□□□□ 0.04
PTPN4-201ENST00000263708 ZBTB7CA1YPR0 619 aa15.31■□□□□ 0.04
PTPN4-201ENST00000263708 MYH16Q9H6N6 1097 aa15.27■□□□□ 0.03
PTPN4-201ENST00000263708 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.26■□□□□ 0.03
PTPN4-201ENST00000263708 TPRNQ4KMQ1 711 aa15.24■□□□□ 0.03
PTPN4-201ENST00000263708 FKBP8Q14318 412 aa15.24■□□□□ 0.03
PTPN4-201ENST00000263708 NCLP19338 710 aaKnown RBP15.22■□□□□ 0.03
PTPN4-201ENST00000263708 P3H3Q8IVL6 736 aa15.21■□□□□ 0.03
PTPN4-201ENST00000263708 ZRSR1Q15695 479 aaKnown RBP15.21■□□□□ 0.03
PTPN4-201ENST00000263708 FAM9BQ8IZU0 186 aa15.21■□□□□ 0.03
PTPN4-201ENST00000263708 TNNT2P45379 298 aaPredicted RBP15.2■□□□□ 0.02
PTPN4-201ENST00000263708 C14orf37Q86TY3 774 aa15.2■□□□□ 0.02
PTPN4-201ENST00000263708 TRIM44Q96DX7 344 aaPredicted RBP15.19■□□□□ 0.02
PTPN4-201ENST00000263708 TAOK2Q9UL54 1235 aa15.17■□□□□ 0.02
PTPN4-201ENST00000263708 HNRNPUQ00839 825 aaKnown RBP eCLIP15.16■□□□□ 0.02
PTPN4-201ENST00000263708 CCDC136Q96JN2 1154 aa15.15■□□□□ 0.02
PTPN4-201ENST00000263708 SENP3Q9H4L4 574 aaPredicted RBP15.15■□□□□ 0.02
PTPN4-201ENST00000263708 WDR43Q15061 677 aaKnown RBP eCLIP15.15■□□□□ 0.02
PTPN4-201ENST00000263708 PTMAP06454 111 aaKnown RBP15.14■□□□□ 0.01
PTPN4-201ENST00000263708 DNTTIP2Q5QJE6 756 aaKnown RBP15.14■□□□□ 0.01
PTPN4-201ENST00000263708 CLSTN1O94985 981 aa15.11■□□□□ 0.01
PTPN4-201ENST00000263708 HAP1P54257 671 aaPredicted RBP15.1■□□□□ 0.01
PTPN4-201ENST00000263708 NPHP1O15259 732 aa15.1■□□□□ 0.01
PTPN4-201ENST00000263708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.09■□□□□ 0.011e-6■□□□□ 10.3
PTPN4-201ENST00000263708 TMC1Q8TDI8 760 aa15.08■□□□□ 0.01
PTPN4-201ENST00000263708 TONSLQ96HA7 1378 aa15.06■□□□□ 0
PTPN4-201ENST00000263708 GOLGA6L22H0YM25 854 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms