Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 AC003669.1-201ENST00000334569 611 ntBASIC13.84□□□□□ -0.19
FOXA2Q9Y261 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 AC091304.2-201ENST00000564639 760 ntBASIC13.84□□□□□ -0.19
FOXA2Q9Y261 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 INTS4P1-201ENST00000438455 1935 ntBASIC13.84□□□□□ -0.19
FOXA2Q9Y261 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA2Q9Y261 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
FOXA2Q9Y261 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 GPR89P-201ENST00000407924 1495 ntBASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 KRT18P31-201ENST00000506277 1292 ntBASIC13.83□□□□□ -0.2
FOXA2Q9Y261 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 MIR5100-201ENST00000579544 119 ntBASIC13.83□□□□□ -0.2
FOXA2Q9Y261 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 RNF216P1-203ENST00000404404 2427 ntBASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
FOXA2Q9Y261 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 UBALD1-205ENST00000590891 2641 ntBASIC13.82□□□□□ -0.2
FOXA2Q9Y261 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.82□□□□□ -0.2
FOXA2Q9Y261 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms