Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.72□□□□□ -0.05
CMTM3Q96MX0 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 AL603832.2-201ENST00000566195 2125 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TSPY20P-201ENST00000450910 630 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 AP003071.4-201ENST00000562276 1284 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 ITM2C-210ENST00000620962 501 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 AL139011.1-202ENST00000642063 584 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 AL391807.1-203ENST00000604392 2365 ntBASIC14.71□□□□□ -0.05
CMTM3Q96MX0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CMTM3Q96MX0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 AC006058.4-201ENST00000624016 1670 ntBASIC14.71□□□□□ -0.06
CMTM3Q96MX0 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 AL596087.1-201ENST00000400979 1969 ntBASIC14.71□□□□□ -0.06
CMTM3Q96MX0 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CMTM3Q96MX0 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CMTM3Q96MX0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms