Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VRK3Q8IV63 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VRK3Q8IV63 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 RNA5SP415-201ENST00000517246 115 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 UNC93B6-202ENST00000528242 690 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 OR7E47P-204ENST00000575924 449 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 AC004790.2-201ENST00000623588 572 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 PGM5P2-202ENST00000637225 1043 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 NKILA-202ENST00000614771 2598 ntBASIC16.67■□□□□ 0.26
VRK3Q8IV63 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VRK3Q8IV63 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.67■□□□□ 0.26
VRK3Q8IV63 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AC011676.5-201ENST00000624864 2660 ntBASIC16.66■□□□□ 0.26
VRK3Q8IV63 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AC009947.1-201ENST00000444350 727 ntBASIC16.66■□□□□ 0.26
VRK3Q8IV63 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VRK3Q8IV63 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.66■□□□□ 0.26
VRK3Q8IV63 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 PRORSD1P-202ENST00000563365 2154 ntBASIC16.65■□□□□ 0.26
VRK3Q8IV63 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 AC108751.1-201ENST00000490852 363 ntBASIC16.65■□□□□ 0.26
VRK3Q8IV63 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
VRK3Q8IV63 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
VRK3Q8IV63 REXO1L3P-201ENST00000622202 1288 ntBASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms