Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
MSH6P52701 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH6P52701 AP000997.3-201ENST00000623333 2250 ntBASIC23.36■■□□□ 1.33
MSH6P52701 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH6P52701 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
MSH6P52701 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 KRT18P55-202ENST00000578578 1546 ntBASIC23.36■■□□□ 1.33
MSH6P52701 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC23.36■■□□□ 1.33
MSH6P52701 DOC2GP-202ENST00000514950 1163 ntBASIC23.36■■□□□ 1.33
MSH6P52701 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC23.36■■□□□ 1.33
MSH6P52701 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH6P52701 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC23.36■■□□□ 1.33
MSH6P52701 AC099568.2-201ENST00000609194 695 ntBASIC23.36■■□□□ 1.33
MSH6P52701 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC23.36■■□□□ 1.33
MSH6P52701 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
MSH6P52701 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
MSH6P52701 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH6P52701 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH6P52701 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 OSM-203ENST00000403463 464 ntTSL 3 BASIC23.35■■□□□ 1.33
MSH6P52701 NME6-203ENST00000415644 849 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 RASL12-203ENST00000434605 982 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 GALT-202ENST00000450095 1280 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 RN7SL828P-201ENST00000607615 303 ntBASIC23.35■■□□□ 1.33
MSH6P52701 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC23.35■■□□□ 1.33
MSH6P52701 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
MSH6P52701 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC23.35■■□□□ 1.33
MSH6P52701 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
MSH6P52701 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH6P52701 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH6P52701 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH6P52701 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH6P52701 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC23.34■■□□□ 1.33
MSH6P52701 AC133552.6-201ENST00000613406 534 ntBASIC23.34■■□□□ 1.33
MSH6P52701 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
MSH6P52701 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC23.34■■□□□ 1.33
MSH6P52701 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
MSH6P52701 SLC7A15P-201ENST00000424028 1363 ntBASIC23.34■■□□□ 1.33
MSH6P52701 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MSH6P52701 AC135776.1-201ENST00000319817 2481 ntBASIC23.34■■□□□ 1.33
MSH6P52701 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH6P52701 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC23.33■■□□□ 1.33
MSH6P52701 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC23.33■■□□□ 1.33
MSH6P52701 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
MSH6P52701 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
MSH6P52701 TMEM14DP-201ENST00000422205 345 ntBASIC23.33■■□□□ 1.33
MSH6P52701 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC23.33■■□□□ 1.33
MSH6P52701 FUZ-207ENST00000526575 482 ntTSL 4 BASIC23.33■■□□□ 1.33
MSH6P52701 AC055876.2-201ENST00000531834 546 ntBASIC23.33■■□□□ 1.33
MSH6P52701 BANF1P1-201ENST00000553684 263 ntBASIC23.33■■□□□ 1.33
MSH6P52701 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
MSH6P52701 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.32
MSH6P52701 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
MSH6P52701 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
MSH6P52701 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC23.32■■□□□ 1.32
MSH6P52701 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC23.32■■□□□ 1.32
MSH6P52701 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH6P52701 SNX29P1-201ENST00000548357 1007 ntBASIC23.32■■□□□ 1.32
MSH6P52701 ORC6-206ENST00000568364 888 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 AP001350.2-201ENST00000625104 1094 ntBASIC23.32■■□□□ 1.32
MSH6P52701 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms