Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.04□□□□□ -0.16
NKX2-1P43699 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX2-1P43699 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 FITM1-202ENST00000559294 800 ntBASIC14.04□□□□□ -0.16
NKX2-1P43699 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.04□□□□□ -0.16
NKX2-1P43699 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.04□□□□□ -0.16
NKX2-1P43699 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.04□□□□□ -0.16
NKX2-1P43699 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 KRT17P2-201ENST00000300992 1314 ntBASIC14.04□□□□□ -0.16
NKX2-1P43699 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
NKX2-1P43699 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
NKX2-1P43699 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
NKX2-1P43699 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
NKX2-1P43699 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.04□□□□□ -0.16
NKX2-1P43699 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.04□□□□□ -0.16
NKX2-1P43699 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
NKX2-1P43699 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX2-1P43699 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX2-1P43699 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 AC096633.1-201ENST00000422446 749 ntBASIC14.03□□□□□ -0.16
NKX2-1P43699 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC14.03□□□□□ -0.16
NKX2-1P43699 IGHV3-52-201ENST00000519770 353 ntBASIC14.03□□□□□ -0.16
NKX2-1P43699 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC14.03□□□□□ -0.16
NKX2-1P43699 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 AC004263.2-201ENST00000617183 678 ntBASIC14.03□□□□□ -0.16
NKX2-1P43699 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NKX2-1P43699 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 EGFEM1P-202ENST00000431685 1563 ntBASIC14.03□□□□□ -0.16
NKX2-1P43699 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC14.03□□□□□ -0.16
NKX2-1P43699 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
NKX2-1P43699 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NKX2-1P43699 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
NKX2-1P43699 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
NKX2-1P43699 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX2-1P43699 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.02□□□□□ -0.16
NKX2-1P43699 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.02□□□□□ -0.16
NKX2-1P43699 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NKX2-1P43699 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX2-1P43699 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX2-1P43699 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.02□□□□□ -0.17
NKX2-1P43699 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX2-1P43699 AP000523.1-201ENST00000398242 1049 ntBASIC14.02□□□□□ -0.17
NKX2-1P43699 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NKX2-1P43699 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.02□□□□□ -0.17
NKX2-1P43699 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.02□□□□□ -0.17
NKX2-1P43699 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms