Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
MSX2P35548 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 AC096633.1-201ENST00000422446 749 ntBASIC16.35■□□□□ 0.21
MSX2P35548 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.35■□□□□ 0.21
MSX2P35548 TSPY20P-201ENST00000450910 630 ntBASIC16.35■□□□□ 0.21
MSX2P35548 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MSX2P35548 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 GCSHP2-201ENST00000560971 527 ntBASIC16.35■□□□□ 0.21
MSX2P35548 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
MSX2P35548 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.35■□□□□ 0.21
MSX2P35548 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
MSX2P35548 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MSX2P35548 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 EGFEM1P-202ENST00000431685 1563 ntBASIC16.34■□□□□ 0.21
MSX2P35548 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MSX2P35548 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
MSX2P35548 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 AC068472.1-201ENST00000474589 881 ntBASIC16.34■□□□□ 0.21
MSX2P35548 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX2P35548 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.34■□□□□ 0.21
MSX2P35548 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.34■□□□□ 0.21
MSX2P35548 AC109462.3-201ENST00000573934 613 ntBASIC16.34■□□□□ 0.21
MSX2P35548 FAM87A-204ENST00000613235 858 ntBASIC16.34■□□□□ 0.21
MSX2P35548 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX2P35548 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MSX2P35548 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.34■□□□□ 0.21
MSX2P35548 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MSX2P35548 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.33■□□□□ 0.21
MSX2P35548 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX2P35548 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX2P35548 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MSX2P35548 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
MSX2P35548 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.33■□□□□ 0.21
MSX2P35548 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
MSX2P35548 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.33■□□□□ 0.21
MSX2P35548 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.33■□□□□ 0.21
MSX2P35548 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
MSX2P35548 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 COX5BP2-201ENST00000392354 334 ntBASIC16.33■□□□□ 0.2
MSX2P35548 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 GCSHP5-201ENST00000443090 522 ntBASIC16.33■□□□□ 0.2
MSX2P35548 AC128688.1-201ENST00000487626 519 ntBASIC16.33■□□□□ 0.2
MSX2P35548 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.33■□□□□ 0.2
MSX2P35548 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.33■□□□□ 0.2
MSX2P35548 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
MSX2P35548 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
MSX2P35548 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MSX2P35548 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms