Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.9■□□□□ 0.14
PRKNO60260 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.9■□□□□ 0.14
PRKNO60260 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.9■□□□□ 0.14
PRKNO60260 OR7E47P-204ENST00000575924 449 ntBASIC15.9■□□□□ 0.14
PRKNO60260 MIR4751-201ENST00000578027 74 ntBASIC15.9■□□□□ 0.14
PRKNO60260 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
PRKNO60260 AC027601.4-201ENST00000611259 610 ntBASIC15.9■□□□□ 0.14
PRKNO60260 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PRKNO60260 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
PRKNO60260 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
PRKNO60260 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
PRKNO60260 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
PRKNO60260 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.14
PRKNO60260 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.89■□□□□ 0.13
PRKNO60260 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.89■□□□□ 0.13
PRKNO60260 KRT18P2-201ENST00000447938 1258 ntBASIC15.89■□□□□ 0.13
PRKNO60260 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 AC064836.3-201ENST00000607928 673 ntBASIC15.89■□□□□ 0.13
PRKNO60260 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.89■□□□□ 0.13
PRKNO60260 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.89■□□□□ 0.13
PRKNO60260 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.89■□□□□ 0.13
PRKNO60260 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
PRKNO60260 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PRKNO60260 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PRKNO60260 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 PAWRP1-201ENST00000451083 565 ntBASIC15.88■□□□□ 0.13
PRKNO60260 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
PRKNO60260 PGAM5P1-201ENST00000518923 814 ntBASIC15.88■□□□□ 0.13
PRKNO60260 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.88■□□□□ 0.13
PRKNO60260 FAM197Y3-203ENST00000618346 717 ntBASIC15.88■□□□□ 0.13
PRKNO60260 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PRKNO60260 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.88■□□□□ 0.13
PRKNO60260 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PRKNO60260 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
PRKNO60260 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.88■□□□□ 0.13
PRKNO60260 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PRKNO60260 EGFEM1P-202ENST00000431685 1563 ntBASIC15.87■□□□□ 0.13
PRKNO60260 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
PRKNO60260 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PRKNO60260 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.87■□□□□ 0.13
PRKNO60260 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PRKNO60260 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PRKNO60260 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PRKNO60260 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms