Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 FAM197Y4-202ENST00000622692 608 ntBASIC12.54□□□□□ -0.4
SMKR1H3BMG3 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 HLA-A-202ENST00000376806 1854 ntBASIC12.54□□□□□ -0.4
SMKR1H3BMG3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
SMKR1H3BMG3 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 AC113404.2-201ENST00000507884 177 ntBASIC12.53□□□□□ -0.4
SMKR1H3BMG3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 MIR3917-201ENST00000580971 93 ntBASIC12.53□□□□□ -0.4
SMKR1H3BMG3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 DECR2-212ENST00000627716 352 ntTSL 2 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 AC092338.2-201ENST00000568827 1415 ntBASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
SMKR1H3BMG3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 PC-208ENST00000529047 1607 ntTSL 3 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms