Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 REXO1L3P-201ENST00000622202 1288 ntBASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TSEN15P1-201ENST00000423257 515 ntBASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 AC190387.1-201ENST00000551683 408 ntBASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 AC092865.6-201ENST00000642101 219 ntBASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NKX2-3Q8TAU0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 CYP51A1P2-201ENST00000419457 1499 ntBASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 AC018845.2-201ENST00000568326 409 ntBASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 AC093028.1-201ENST00000622998 982 ntBASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC20.14■□□□□ 0.81
NKX2-3Q8TAU0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 RNF216P1-203ENST00000404404 2427 ntBASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 CD99-202ENST00000381180 530 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 AC138761.1-201ENST00000584393 385 ntBASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 AL078644.1-201ENST00000609881 752 ntBASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
NKX2-3Q8TAU0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms