Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC008894.3-201ENST00000624324 3103 ntBASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CLHC1Q8NHS4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 NSUN5P1-202ENST00000421140 1535 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 NSUN5P2-203ENST00000457352 1529 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 AC003669.1-201ENST00000334569 611 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 BNIP3P18-201ENST00000593976 575 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 AD001527.2-201ENST00000622994 785 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 IER3-202ENST00000376377 1350 ntBASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.46■□□□□ 0.23
CLHC1Q8NHS4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CLHC1Q8NHS4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 KRT17P6-201ENST00000453795 1220 ntBASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 Z69720.1-201ENST00000601483 472 ntBASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.45■□□□□ 0.22
CLHC1Q8NHS4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms