Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 SART3-203ENST00000546611 1184 ntBASIC20.42■□□□□ 0.86
RNF20Q5VTR2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 AL590787.1-201ENST00000568856 1315 ntBASIC20.42■□□□□ 0.86
RNF20Q5VTR2 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RNF20Q5VTR2 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AP002414.1-201ENST00000391405 1147 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AC139887.3-201ENST00000568585 713 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 MTDHP4-201ENST00000600287 670 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AL139424.1-201ENST00000607572 797 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 AC012313.10-201ENST00000623509 926 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.41■□□□□ 0.86
RNF20Q5VTR2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF20Q5VTR2 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 AKR1C7P-201ENST00000305623 895 ntBASIC20.4■□□□□ 0.86
RNF20Q5VTR2 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 AP002490.2-201ENST00000524791 560 ntBASIC20.4■□□□□ 0.86
RNF20Q5VTR2 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 IFNL4P1-201ENST00000607083 540 ntBASIC20.4■□□□□ 0.86
RNF20Q5VTR2 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 CROCCP1-201ENST00000426910 5675 ntBASIC20.4■□□□□ 0.86
RNF20Q5VTR2 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.4■□□□□ 0.86
RNF20Q5VTR2 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.86
RNF20Q5VTR2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF20Q5VTR2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF20Q5VTR2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF20Q5VTR2 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF20Q5VTR2 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms