Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.41□□□□□ -0.1
CD74P04233 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.41□□□□□ -0.1
CD74P04233 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.41□□□□□ -0.1
CD74P04233 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CD74P04233 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CD74P04233 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CD74P04233 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 AC126177.1-201ENST00000547829 2218 ntBASIC14.41□□□□□ -0.1
CD74P04233 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.41□□□□□ -0.1
CD74P04233 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CD74P04233 FUT8-AS1-201ENST00000621019 1521 ntBASIC14.41□□□□□ -0.1
CD74P04233 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CD74P04233 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
CD74P04233 HMGA1P5-201ENST00000412453 271 ntBASIC14.4□□□□□ -0.1
CD74P04233 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 ECEL1P2-202ENST00000465689 757 ntBASIC14.4□□□□□ -0.1
CD74P04233 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC14.4□□□□□ -0.1
CD74P04233 FAM87A-204ENST00000613235 858 ntBASIC14.4□□□□□ -0.1
CD74P04233 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CD74P04233 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CD74P04233 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.4□□□□□ -0.1
CD74P04233 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CD74P04233 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CD74P04233 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.39□□□□□ -0.11
CD74P04233 AL135999.2-201ENST00000622438 1686 ntBASIC14.39□□□□□ -0.11
CD74P04233 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CD74P04233 NFIC-211ENST00000641145 8399 ntBASIC14.39□□□□□ -0.11
CD74P04233 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.39□□□□□ -0.11
CD74P04233 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CD74P04233 AL353692.3-201ENST00000407031 1396 ntBASIC14.39□□□□□ -0.11
CD74P04233 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CD74P04233 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CD74P04233 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CD74P04233 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.39□□□□□ -0.11
CD74P04233 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms