Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HMGB3O15347 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
HMGB3O15347 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 LYSMD4-203ENST00000378904 2122 ntBASIC13.82□□□□□ -0.2
HMGB3O15347 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
HMGB3O15347 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.82□□□□□ -0.2
HMGB3O15347 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
HMGB3O15347 MESTP1-201ENST00000404287 994 ntBASIC13.82□□□□□ -0.2
HMGB3O15347 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.82□□□□□ -0.2
HMGB3O15347 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC13.82□□□□□ -0.2
HMGB3O15347 AC133681.1-201ENST00000465482 601 ntBASIC13.82□□□□□ -0.2
HMGB3O15347 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.82□□□□□ -0.2
HMGB3O15347 RARRES2P10-201ENST00000564312 460 ntBASIC13.82□□□□□ -0.2
HMGB3O15347 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.82□□□□□ -0.2
HMGB3O15347 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 AC046185.3-201ENST00000623228 1824 ntBASIC13.82□□□□□ -0.2
HMGB3O15347 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
HMGB3O15347 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
HMGB3O15347 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.82□□□□□ -0.2
HMGB3O15347 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HMGB3O15347 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 FSCN1P1-201ENST00000568912 1481 ntBASIC13.81□□□□□ -0.2
HMGB3O15347 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HMGB3O15347 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 AL353807.1-201ENST00000427475 662 ntBASIC13.81□□□□□ -0.2
HMGB3O15347 FDX2-206ENST00000492239 773 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.81□□□□□ -0.2
HMGB3O15347 TK2-204ENST00000525974 1178 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC13.81□□□□□ -0.2
HMGB3O15347 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
HMGB3O15347 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 AC103702.1-201ENST00000548801 2630 ntBASIC13.81□□□□□ -0.2
HMGB3O15347 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 AC007950.2-201ENST00000615045 2347 ntBASIC13.81□□□□□ -0.2
HMGB3O15347 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
HMGB3O15347 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
HMGB3O15347 AC096733.2-201ENST00000609937 1394 ntBASIC13.81□□□□□ -0.2
HMGB3O15347 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
HMGB3O15347 KRT8P7-201ENST00000533003 1432 ntBASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms