Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.37■□□□□ 0.69
CCNA1P78396 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC19.37■□□□□ 0.69
CCNA1P78396 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 RNU1-129P-201ENST00000384064 167 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC19.37■□□□□ 0.69
CCNA1P78396 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.37■□□□□ 0.69
CCNA1P78396 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.37■□□□□ 0.69
CCNA1P78396 AC069120.2-201ENST00000524091 540 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 SLC25A39P2-201ENST00000537614 270 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.37■□□□□ 0.69
CCNA1P78396 U1.21-201ENST00000580816 167 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 RN7SL204P-201ENST00000582831 262 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 MIR6080-201ENST00000617359 66 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 AL390754.1-201ENST00000619088 582 ntBASIC19.37■□□□□ 0.69
CCNA1P78396 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.37■□□□□ 0.69
CCNA1P78396 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCNA1P78396 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CCNA1P78396 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCNA1P78396 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 AC009113.1-201ENST00000570267 2443 ntBASIC19.36■□□□□ 0.69
CCNA1P78396 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
CCNA1P78396 TOP3BP1-201ENST00000420768 1380 ntBASIC19.36■□□□□ 0.69
CCNA1P78396 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.36■□□□□ 0.69
CCNA1P78396 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.36■□□□□ 0.69
CCNA1P78396 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.36■□□□□ 0.69
CCNA1P78396 ALG1L8P-201ENST00000533887 760 ntBASIC19.36■□□□□ 0.69
CCNA1P78396 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.36■□□□□ 0.69
CCNA1P78396 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.36■□□□□ 0.69
CCNA1P78396 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCNA1P78396 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCNA1P78396 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
CCNA1P78396 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 AC063926.2-201ENST00000623766 1308 ntBASIC19.35■□□□□ 0.69
CCNA1P78396 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CCNA1P78396 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 AC005034.1-201ENST00000426657 489 ntBASIC19.35■□□□□ 0.69
CCNA1P78396 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.35■□□□□ 0.69
CCNA1P78396 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CCNA1P78396 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 AC027307.2-201ENST00000591252 911 ntBASIC19.35■□□□□ 0.69
CCNA1P78396 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.35■□□□□ 0.69
CCNA1P78396 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.35■□□□□ 0.69
CCNA1P78396 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCNA1P78396 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCNA1P78396 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC19.34■□□□□ 0.69
CCNA1P78396 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.34■□□□□ 0.69
CCNA1P78396 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.34■□□□□ 0.69
CCNA1P78396 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
CCNA1P78396 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.34■□□□□ 0.69
CCNA1P78396 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCNA1P78396 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms