Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.28■□□□□ 0.36
CHRNA4P43681 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 ELK2BP-201ENST00000415014 1224 ntBASIC17.28■□□□□ 0.36
CHRNA4P43681 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.28■□□□□ 0.36
CHRNA4P43681 HNRNPDP1-201ENST00000439535 754 ntBASIC17.28■□□□□ 0.36
CHRNA4P43681 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 FAM197Y8-203ENST00000450145 560 ntBASIC17.28■□□□□ 0.36
CHRNA4P43681 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 RNPS1P1-201ENST00000507437 918 ntBASIC17.28■□□□□ 0.36
CHRNA4P43681 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CHRNA4P43681 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.28■□□□□ 0.36
CHRNA4P43681 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 AC004706.3-202ENST00000621574 984 ntBASIC17.28■□□□□ 0.36
CHRNA4P43681 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA4P43681 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.28■□□□□ 0.36
CHRNA4P43681 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CHRNA4P43681 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA4P43681 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.28■□□□□ 0.36
CHRNA4P43681 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.27■□□□□ 0.36
CHRNA4P43681 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.27■□□□□ 0.36
CHRNA4P43681 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 AC004870.1-201ENST00000315132 882 ntBASIC17.27■□□□□ 0.36
CHRNA4P43681 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CHRNA4P43681 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.27■□□□□ 0.36
CHRNA4P43681 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.27■□□□□ 0.36
CHRNA4P43681 AC107918.4-202ENST00000641623 219 ntBASIC17.27■□□□□ 0.36
CHRNA4P43681 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CHRNA4P43681 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.27■□□□□ 0.35
CHRNA4P43681 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHRNA4P43681 AGGF1P2-201ENST00000426656 2106 ntBASIC17.27■□□□□ 0.35
CHRNA4P43681 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CHRNA4P43681 AC006504.4-201ENST00000592118 1568 ntBASIC17.27■□□□□ 0.35
CHRNA4P43681 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CHRNA4P43681 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHRNA4P43681 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.27■□□□□ 0.35
CHRNA4P43681 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CHRNA4P43681 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CHRNA4P43681 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CHRNA4P43681 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.26■□□□□ 0.35
CHRNA4P43681 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CHRNA4P43681 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.26■□□□□ 0.35
CHRNA4P43681 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.26■□□□□ 0.35
CHRNA4P43681 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.26■□□□□ 0.35
CHRNA4P43681 AC018712.1-201ENST00000455767 687 ntBASIC17.26■□□□□ 0.35
CHRNA4P43681 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 AC073648.2-201ENST00000510116 352 ntBASIC17.26■□□□□ 0.35
CHRNA4P43681 AC104692.2-201ENST00000603054 253 ntBASIC17.26■□□□□ 0.35
CHRNA4P43681 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CHRNA4P43681 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms