Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 AC092119.3-201ENST00000612618 583 ntBASIC13.1□□□□□ -0.31
HLA-DMBP28068 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 PCDH8P1-201ENST00000428983 2773 ntBASIC13.1□□□□□ -0.31
HLA-DMBP28068 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.1□□□□□ -0.31
HLA-DMBP28068 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HLA-DMBP28068 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AC078925.2-201ENST00000624013 1973 ntBASIC13.09□□□□□ -0.31
HLA-DMBP28068 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 ATP5G2P1-201ENST00000433580 426 ntBASIC13.09□□□□□ -0.31
HLA-DMBP28068 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 KRT8P26-201ENST00000534154 1276 ntBASIC13.09□□□□□ -0.31
HLA-DMBP28068 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HLA-DMBP28068 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HLA-DMBP28068 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.08□□□□□ -0.31
HLA-DMBP28068 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.08□□□□□ -0.31
HLA-DMBP28068 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.08□□□□□ -0.31
HLA-DMBP28068 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
HLA-DMBP28068 AC016734.2-201ENST00000624325 1377 ntBASIC13.08□□□□□ -0.31
HLA-DMBP28068 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DMBP28068 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
HLA-DMBP28068 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms