Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MKS1Q9NXB0 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 ACTG1P4-201ENST00000425123 1122 ntBASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AL137013.1-201ENST00000432946 1228 ntBASIC16.93■□□□□ 0.3
MKS1Q9NXB0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AC090616.6-201ENST00000582640 721 ntBASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 AC124864.1-201ENST00000623408 392 ntBASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MKS1Q9NXB0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 AC011840.4-201ENST00000578471 627 ntBASIC16.92■□□□□ 0.3
MKS1Q9NXB0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 AC005363.2-201ENST00000618631 242 ntBASIC16.92■□□□□ 0.3
MKS1Q9NXB0 AL139011.1-202ENST00000642063 584 ntBASIC16.92■□□□□ 0.3
MKS1Q9NXB0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.92■□□□□ 0.3
MKS1Q9NXB0 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
MKS1Q9NXB0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms