Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
RAE1P78406 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RAE1P78406 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RAE1P78406 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.26■□□□□ 0.19
RAE1P78406 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 AKR1C7P-201ENST00000305623 895 ntBASIC16.26■□□□□ 0.19
RAE1P78406 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.26■□□□□ 0.19
RAE1P78406 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.26■□□□□ 0.19
RAE1P78406 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.26■□□□□ 0.19
RAE1P78406 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.26■□□□□ 0.19
RAE1P78406 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.26■□□□□ 0.19
RAE1P78406 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RAE1P78406 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 NCF1C-201ENST00000438382 1427 ntBASIC16.26■□□□□ 0.19
RAE1P78406 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.26■□□□□ 0.19
RAE1P78406 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RAE1P78406 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.26■□□□□ 0.19
RAE1P78406 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.25■□□□□ 0.19
RAE1P78406 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 AC091304.2-201ENST00000564639 760 ntBASIC16.25■□□□□ 0.19
RAE1P78406 REXO1L6P-202ENST00000619970 1078 ntBASIC16.25■□□□□ 0.19
RAE1P78406 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 AC012313.10-201ENST00000623509 926 ntBASIC16.25■□□□□ 0.19
RAE1P78406 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.25■□□□□ 0.19
RAE1P78406 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.25■□□□□ 0.19
RAE1P78406 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
RAE1P78406 AC243591.1-201ENST00000452967 1364 ntBASIC16.25■□□□□ 0.19
RAE1P78406 PCDHB19P-201ENST00000570871 2371 ntBASIC16.24■□□□□ 0.19
RAE1P78406 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
RAE1P78406 TUBB8P12-201ENST00000308911 1335 ntBASIC16.24■□□□□ 0.19
RAE1P78406 TUBB7P-202ENST00000428444 1305 ntBASIC16.24■□□□□ 0.19
RAE1P78406 TUBB8P7-204ENST00000567960 1332 ntBASIC16.24■□□□□ 0.19
RAE1P78406 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.24■□□□□ 0.19
RAE1P78406 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.24■□□□□ 0.19
RAE1P78406 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.24■□□□□ 0.19
RAE1P78406 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
RAE1P78406 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.24■□□□□ 0.19
RAE1P78406 PRELID1P1-202ENST00000567272 903 ntBASIC16.24■□□□□ 0.19
RAE1P78406 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.24■□□□□ 0.19
RAE1P78406 AC008608.2-201ENST00000606089 416 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms