Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDH6P55285 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.87■□□□□ 0.45
CDH6P55285 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.87■□□□□ 0.45
CDH6P55285 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDH6P55285 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDH6P55285 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH6P55285 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.86■□□□□ 0.45
CDH6P55285 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.86■□□□□ 0.45
CDH6P55285 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH6P55285 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH6P55285 AC091304.2-201ENST00000564639 760 ntBASIC17.86■□□□□ 0.45
CDH6P55285 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.86■□□□□ 0.45
CDH6P55285 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH6P55285 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 FRMD8P1-201ENST00000440433 1524 ntBASIC17.86■□□□□ 0.45
CDH6P55285 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.86■□□□□ 0.45
CDH6P55285 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.86■□□□□ 0.45
CDH6P55285 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.86■□□□□ 0.45
CDH6P55285 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.86■□□□□ 0.45
CDH6P55285 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDH6P55285 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 RBM17P3-201ENST00000417687 1192 ntBASIC17.85■□□□□ 0.45
CDH6P55285 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 LINC00982-205ENST00000420957 435 ntBASIC17.85■□□□□ 0.45
CDH6P55285 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.85■□□□□ 0.45
CDH6P55285 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 MTDHP3-201ENST00000594186 672 ntBASIC17.85■□□□□ 0.45
CDH6P55285 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.85■□□□□ 0.45
CDH6P55285 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDH6P55285 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.85■□□□□ 0.45
CDH6P55285 AC084018.2-201ENST00000613093 2607 ntBASIC17.85■□□□□ 0.45
CDH6P55285 CROCCP1-201ENST00000426910 5675 ntBASIC17.84■□□□□ 0.45
CDH6P55285 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.84■□□□□ 0.45
CDH6P55285 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH6P55285 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.84■□□□□ 0.45
CDH6P55285 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
CDH6P55285 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDH6P55285 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CDH6P55285 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.84■□□□□ 0.45
CDH6P55285 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.84■□□□□ 0.45
CDH6P55285 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 NKAPP1-205ENST00000585790 367 ntBASIC17.84■□□□□ 0.45
CDH6P55285 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH6P55285 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.84■□□□□ 0.45
CDH6P55285 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.84■□□□□ 0.45
CDH6P55285 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.84■□□□□ 0.45
CDH6P55285 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDH6P55285 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms