Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC19.97■□□□□ 0.79
SCN4AP35499 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 RPS19-201ENST00000221975 500 ntTSL 3 BASIC19.97■□□□□ 0.79
SCN4AP35499 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SCN4AP35499 AC114501.2-201ENST00000439631 535 ntBASIC19.97■□□□□ 0.79
SCN4AP35499 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.97■□□□□ 0.79
SCN4AP35499 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
SCN4AP35499 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.97■□□□□ 0.79
SCN4AP35499 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
SCN4AP35499 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.97■□□□□ 0.79
SCN4AP35499 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 LINC00304-203ENST00000565008 1864 ntBASIC19.96■□□□□ 0.79
SCN4AP35499 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
SCN4AP35499 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SCN4AP35499 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.96■□□□□ 0.79
SCN4AP35499 AC104989.1-201ENST00000519711 778 ntBASIC19.96■□□□□ 0.79
SCN4AP35499 TPRX2P-201ENST00000535362 881 ntBASIC19.96■□□□□ 0.79
SCN4AP35499 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.96■□□□□ 0.79
SCN4AP35499 AC105021.1-202ENST00000570572 669 ntBASIC19.96■□□□□ 0.79
SCN4AP35499 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.96■□□□□ 0.79
SCN4AP35499 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SCN4AP35499 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.96■□□□□ 0.79
SCN4AP35499 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 LYSMD4-203ENST00000378904 2122 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC19.95■□□□□ 0.78
SCN4AP35499 RNA5SP410-201ENST00000516285 106 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 RAB35-202ENST00000534951 939 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.95■□□□□ 0.78
SCN4AP35499 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC19.95■□□□□ 0.78
SCN4AP35499 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
SCN4AP35499 LINC00896-202ENST00000609602 2128 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
SCN4AP35499 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC19.95■□□□□ 0.78
SCN4AP35499 AL355994.2-201ENST00000447882 704 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
SCN4AP35499 ELK1P1-201ENST00000485699 580 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.95■□□□□ 0.78
SCN4AP35499 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.95■□□□□ 0.78
SCN4AP35499 AP001350.2-201ENST00000625104 1094 ntBASIC19.95■□□□□ 0.78
SCN4AP35499 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SCN4AP35499 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN4AP35499 REXO1L9P-201ENST00000604264 2108 ntBASIC19.94■□□□□ 0.78
SCN4AP35499 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN4AP35499 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN4AP35499 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SCN4AP35499 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SCN4AP35499 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 CYP2A7P1-201ENST00000595391 815 ntBASIC19.94■□□□□ 0.78
SCN4AP35499 SRD5A3P1-201ENST00000603021 949 ntBASIC19.94■□□□□ 0.78
SCN4AP35499 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.94■□□□□ 0.78
SCN4AP35499 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
SCN4AP35499 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SCN4AP35499 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN4AP35499 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SCN4AP35499 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN4AP35499 HLA-DPB2-205ENST00000435074 1188 ntBASIC19.93■□□□□ 0.78
SCN4AP35499 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC19.93■□□□□ 0.78
SCN4AP35499 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SCN4AP35499 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC19.93■□□□□ 0.78
SCN4AP35499 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms