Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.05■□□□□ 0.48
BDNFP23560 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.05■□□□□ 0.48
BDNFP23560 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
BDNFP23560 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 BCAR1-209ENST00000546196 1340 ntBASIC18.04■□□□□ 0.48
BDNFP23560 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
BDNFP23560 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
BDNFP23560 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 AC141586.5-201ENST00000624546 2050 ntBASIC18.04■□□□□ 0.48
BDNFP23560 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.04■□□□□ 0.48
BDNFP23560 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.04■□□□□ 0.48
BDNFP23560 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.04■□□□□ 0.48
BDNFP23560 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.04■□□□□ 0.48
BDNFP23560 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.04■□□□□ 0.48
BDNFP23560 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.04■□□□□ 0.48
BDNFP23560 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
BDNFP23560 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.04■□□□□ 0.48
BDNFP23560 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
BDNFP23560 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.03■□□□□ 0.48
BDNFP23560 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.03■□□□□ 0.48
BDNFP23560 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.03■□□□□ 0.48
BDNFP23560 FAM185BP-201ENST00000443595 716 ntBASIC18.03■□□□□ 0.48
BDNFP23560 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.03■□□□□ 0.48
BDNFP23560 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.03■□□□□ 0.48
BDNFP23560 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
BDNFP23560 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.03■□□□□ 0.48
BDNFP23560 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.03■□□□□ 0.48
BDNFP23560 AC139530.3-201ENST00000620344 690 ntBASIC18.03■□□□□ 0.48
BDNFP23560 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
BDNFP23560 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 AC011270.2-201ENST00000624293 2550 ntBASIC18.03■□□□□ 0.48
BDNFP23560 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.03■□□□□ 0.48
BDNFP23560 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.03■□□□□ 0.48
BDNFP23560 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
BDNFP23560 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
BDNFP23560 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 AC129492.6-201ENST00000611383 1305 ntBASIC18.02■□□□□ 0.48
BDNFP23560 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.02■□□□□ 0.48
BDNFP23560 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
BDNFP23560 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
BDNFP23560 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
BDNFP23560 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
BDNFP23560 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms