Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 CBR1-202ENST00000399191 838 ntTSL 3 BASIC22.42■■□□□ 1.18
COL3A1P02461 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC22.42■■□□□ 1.18
COL3A1P02461 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 RARRES2P8-201ENST00000566335 367 ntBASIC22.42■■□□□ 1.18
COL3A1P02461 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC22.42■■□□□ 1.18
COL3A1P02461 WT1-AS_2.1-201ENST00000613208 137 ntBASIC22.42■■□□□ 1.18
COL3A1P02461 AC006277.1-201ENST00000624348 1610 ntBASIC22.42■■□□□ 1.18
COL3A1P02461 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC22.42■■□□□ 1.18
COL3A1P02461 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
COL3A1P02461 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL3A1P02461 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC22.41■■□□□ 1.18
COL3A1P02461 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 AC002056.1-201ENST00000395613 760 ntBASIC22.41■■□□□ 1.18
COL3A1P02461 AC004461.1-201ENST00000412461 403 ntBASIC22.41■■□□□ 1.18
COL3A1P02461 NMU-203ENST00000507338 658 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 RNF34-208ENST00000555076 593 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 AC105339.1-204ENST00000636249 355 ntBASIC22.41■■□□□ 1.18
COL3A1P02461 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 EML3-212ENST00000494176 2901 ntTSL 2 BASIC22.41■■□□□ 1.18
COL3A1P02461 EML3-216ENST00000529309 2909 ntTSL 2 BASIC22.41■■□□□ 1.18
COL3A1P02461 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC22.41■■□□□ 1.18
COL3A1P02461 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
COL3A1P02461 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC22.41■■□□□ 1.18
COL3A1P02461 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC22.41■■□□□ 1.18
COL3A1P02461 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC22.41■■□□□ 1.18
COL3A1P02461 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 AL671710.1-201ENST00000610245 2349 ntBASIC22.4■■□□□ 1.18
COL3A1P02461 AL645728.1-201ENST00000366221 2101 ntBASIC22.4■■□□□ 1.18
COL3A1P02461 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC22.4■■□□□ 1.18
COL3A1P02461 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC22.4■■□□□ 1.18
COL3A1P02461 CDK2AP2P3-201ENST00000422476 372 ntBASIC22.4■■□□□ 1.18
COL3A1P02461 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
COL3A1P02461 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
COL3A1P02461 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC22.4■■□□□ 1.18
COL3A1P02461 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
COL3A1P02461 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC22.4■■□□□ 1.18
COL3A1P02461 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL3A1P02461 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
COL3A1P02461 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
COL3A1P02461 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL3A1P02461 AC016027.1-202ENST00000607927 1699 ntBASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms