Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
CLPTM1O96005 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLPTM1O96005 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CLPTM1O96005 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CLPTM1O96005 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 AC009102.3-201ENST00000623118 1491 ntBASIC16.27■□□□□ 0.19
CLPTM1O96005 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.27■□□□□ 0.19
CLPTM1O96005 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CLPTM1O96005 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CLPTM1O96005 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CLPTM1O96005 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.26■□□□□ 0.19
CLPTM1O96005 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CLPTM1O96005 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
CLPTM1O96005 SLC25A1P2-201ENST00000430693 912 ntBASIC16.26■□□□□ 0.19
CLPTM1O96005 CCR12P-201ENST00000446203 998 ntBASIC16.26■□□□□ 0.19
CLPTM1O96005 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.26■□□□□ 0.19
CLPTM1O96005 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.26■□□□□ 0.19
CLPTM1O96005 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 AC116562.4-202ENST00000641738 218 ntBASIC16.26■□□□□ 0.19
CLPTM1O96005 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
CLPTM1O96005 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.26■□□□□ 0.19
CLPTM1O96005 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLPTM1O96005 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
CLPTM1O96005 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CLPTM1O96005 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CLPTM1O96005 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CLPTM1O96005 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 CA15P1-201ENST00000481698 905 ntBASIC16.25■□□□□ 0.19
CLPTM1O96005 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.25■□□□□ 0.19
CLPTM1O96005 AL023803.3-201ENST00000615559 522 ntBASIC16.25■□□□□ 0.19
CLPTM1O96005 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
CLPTM1O96005 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.25■□□□□ 0.19
CLPTM1O96005 REXO1L11P-201ENST00000620964 1927 ntBASIC16.25■□□□□ 0.19
CLPTM1O96005 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CLPTM1O96005 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.25■□□□□ 0.19
CLPTM1O96005 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLPTM1O96005 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.24■□□□□ 0.19
CLPTM1O96005 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CLPTM1O96005 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.24■□□□□ 0.19
CLPTM1O96005 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLPTM1O96005 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms