Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.55■□□□□ 0.24
SLC28A1O00337 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.55■□□□□ 0.24
SLC28A1O00337 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.55■□□□□ 0.24
SLC28A1O00337 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.55■□□□□ 0.24
SLC28A1O00337 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.55■□□□□ 0.24
SLC28A1O00337 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SLC28A1O00337 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.55■□□□□ 0.24
SLC28A1O00337 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SLC28A1O00337 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SLC28A1O00337 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SLC28A1O00337 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SLC28A1O00337 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.55■□□□□ 0.24
SLC28A1O00337 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SLC28A1O00337 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SLC28A1O00337 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.55■□□□□ 0.24
SLC28A1O00337 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SLC28A1O00337 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.54■□□□□ 0.24
SLC28A1O00337 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SLC28A1O00337 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SLC28A1O00337 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 RNF216P1-203ENST00000404404 2427 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SLC28A1O00337 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 SIGLEC30P-201ENST00000455569 941 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 AC096582.2-201ENST00000510860 516 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 KRT18P21-201ENST00000515767 1272 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 AP002490.2-201ENST00000524791 560 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 TPSP2-201ENST00000561760 610 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SLC28A1O00337 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.54■□□□□ 0.24
SLC28A1O00337 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.54■□□□□ 0.24
SLC28A1O00337 PMPCAP1-201ENST00000508114 1576 ntBASIC16.54■□□□□ 0.24
SLC28A1O00337 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SLC28A1O00337 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SLC28A1O00337 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.53■□□□□ 0.24
SLC28A1O00337 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.53■□□□□ 0.24
SLC28A1O00337 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SLC28A1O00337 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SLC28A1O00337 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.53■□□□□ 0.24
SLC28A1O00337 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SLC28A1O00337 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.53■□□□□ 0.24
SLC28A1O00337 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.53■□□□□ 0.24
SLC28A1O00337 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.53■□□□□ 0.24
SLC28A1O00337 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.53■□□□□ 0.24
SLC28A1O00337 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 NSUN5P1-202ENST00000421140 1535 ntBASIC16.53■□□□□ 0.24
SLC28A1O00337 NSUN5P2-203ENST00000457352 1529 ntBASIC16.53■□□□□ 0.24
SLC28A1O00337 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.53■□□□□ 0.24
SLC28A1O00337 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.53■□□□□ 0.24
SLC28A1O00337 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.53■□□□□ 0.24
SLC28A1O00337 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SLC28A1O00337 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SLC28A1O00337 AL603756.1-201ENST00000606511 2163 ntBASIC16.53■□□□□ 0.24
SLC28A1O00337 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.52■□□□□ 0.24
SLC28A1O00337 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SLC28A1O00337 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms