Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
SIX2Q9NPC8 AC243591.1-201ENST00000452967 1364 ntBASIC18.42■□□□□ 0.54
SIX2Q9NPC8 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.42■□□□□ 0.54
SIX2Q9NPC8 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 PCDHB19P-201ENST00000570871 2371 ntBASIC18.41■□□□□ 0.54
SIX2Q9NPC8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SIX2Q9NPC8 NCF1C-201ENST00000438382 1427 ntBASIC18.4■□□□□ 0.54
SIX2Q9NPC8 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 TERC-201ENST00000602385 541 ntBASIC18.4■□□□□ 0.54
SIX2Q9NPC8 AC008608.2-201ENST00000606089 416 ntBASIC18.4■□□□□ 0.54
SIX2Q9NPC8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SIX2Q9NPC8 AL603756.1-201ENST00000606511 2163 ntBASIC18.4■□□□□ 0.54
SIX2Q9NPC8 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SIX2Q9NPC8 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SIX2Q9NPC8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.39■□□□□ 0.54
SIX2Q9NPC8 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.39■□□□□ 0.54
SIX2Q9NPC8 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 AF238378.1-201ENST00000526806 358 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 AC091304.2-201ENST00000564639 760 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 AL139424.1-201ENST00000607572 797 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TUBB8P12-201ENST00000308911 1335 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TUBB7P-202ENST00000428444 1305 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TUBB8P7-204ENST00000567960 1332 ntBASIC18.39■□□□□ 0.53
SIX2Q9NPC8 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SIX2Q9NPC8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SIX2Q9NPC8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms