Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 AL353135.1-201ENST00000606729 504 ntBASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHROOM3Q8TF72 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHROOM3Q8TF72 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 AC099398.1-201ENST00000567919 2776 ntBASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.46■□□□□ 0.39
SHROOM3Q8TF72 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
SHROOM3Q8TF72 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHROOM3Q8TF72 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms