Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.922e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-209ENST00000594116 420 ntTSL 320.81■□□□□ 0.922e-6■□□□□ 8.3
DDX55Q8NHQ9 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.35■□□□□ 0.852e-6■□□□□ 8.3
DDX55Q8NHQ9 C2orf42-212ENST00000470096 579 ntTSL 420.2■□□□□ 0.822e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.1■□□□□ 0.815e-12■□□□□ 8.3
DDX55Q8NHQ9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.82e-6■□□□□ 8.3
DDX55Q8NHQ9 PIN1-203ENST00000585442 705 ntTSL 520.07■□□□□ 0.82e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-209ENST00000543699 1001 ntTSL 519.94■□□□□ 0.782e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2K-202ENST00000438068 2262 ntTSL 219.92■□□□□ 0.782e-6■□□□□ 8.3
DDX55Q8NHQ9 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC19.9■□□□□ 0.782e-6■□□□□ 8.3
DDX55Q8NHQ9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.85■□□□□ 0.772e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC19.85■□□□□ 0.772e-6■□□□□ 8.3
DDX55Q8NHQ9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.79■□□□□ 0.762e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-207ENST00000593463 573 ntTSL 419.67■□□□□ 0.742e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-214ENST00000595665 576 ntTSL 419.67■□□□□ 0.742e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-218ENST00000597816 692 ntTSL 319.67■□□□□ 0.742e-6■□□□□ 8.3
DDX55Q8NHQ9 AMHR2-205ENST00000550839 887 ntTSL 319.59■□□□□ 0.732e-6■□□□□ 8.3
DDX55Q8NHQ9 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.712e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-206ENST00000540962 793 ntTSL 219.4■□□□□ 0.72e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-226ENST00000599724 910 ntTSL 519.38■□□□□ 0.692e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)19.37■□□□□ 0.695e-12■□□□□ 8.3
DDX55Q8NHQ9 CCDC28B-205ENST00000483009 615 ntTSL 519.18■□□□□ 0.662e-6■□□□□ 8.3
DDX55Q8NHQ9 STRN4-207ENST00000594357 850 ntTSL 519.17■□□□□ 0.662e-6■□□□□ 8.3
DDX55Q8NHQ9 STRN4-221ENST00000601631 1125 ntTSL 219.17■□□□□ 0.662e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-237ENST00000622107 590 ntTSL 418.26■□□□□ 0.512e-6■□□□□ 8.3
DDX55Q8NHQ9 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-6■□□□□ 8.3
DDX55Q8NHQ9 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.422e-6■□□□□ 8.3
DDX55Q8NHQ9 LRCH4-202ENST00000467201 4754 ntTSL 217.5■□□□□ 0.392e-6■□□□□ 8.3
DDX55Q8NHQ9 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.34■□□□□ 0.372e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.372e-6■□□□□ 8.3
DDX55Q8NHQ9 PIN1-208ENST00000589058 536 ntTSL 317.33■□□□□ 0.362e-6■□□□□ 8.3
DDX55Q8NHQ9 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.352e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP5C-208ENST00000491003 878 ntTSL 317.17■□□□□ 0.342e-6■□□□□ 8.3
DDX55Q8NHQ9 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.07■□□□□ 0.322e-6■□□□□ 8.3
DDX55Q8NHQ9 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.282e-6■□□□□ 8.3
DDX55Q8NHQ9 STRN4-206ENST00000594287 951 ntTSL 516.62■□□□□ 0.252e-6■□□□□ 8.3
DDX55Q8NHQ9 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.61■□□□□ 0.252e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)16.6■□□□□ 0.255e-12■□□□□ 8.3
DDX55Q8NHQ9 TIA1-210ENST00000474809 915 ntTSL 516.21■□□□□ 0.192e-6■□□□□ 8.3
DDX55Q8NHQ9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.172e-6■□□□□ 8.3
DDX55Q8NHQ9 STRN4-216ENST00000598074 448 ntTSL 415.95■□□□□ 0.142e-6■□□□□ 8.3
DDX55Q8NHQ9 RFNG-202ENST00000429557 994 ntTSL 5 BASIC15.81■□□□□ 0.122e-6■□□□□ 8.3
DDX55Q8NHQ9 COQ4-202ENST00000372875 928 ntTSL 2 BASIC15.54■□□□□ 0.082e-6■□□□□ 8.3
DDX55Q8NHQ9 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.072e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.062e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-204ENST00000474543 2047 ntTSL 515.44■□□□□ 0.065e-12■□□□□ 8.3
DDX55Q8NHQ9 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.022e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-205ENST00000595984 434 ntTSL 314.8□□□□□ -0.045e-12■□□□□ 8.3
DDX55Q8NHQ9 AMHR2-206ENST00000552233 2162 ntTSL 1 (best)14.44□□□□□ -0.12e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-238ENST00000622457 547 ntTSL 214.36□□□□□ -0.112e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-207ENST00000479207 1112 ntTSL 314.22□□□□□ -0.135e-12■□□□□ 8.3
DDX55Q8NHQ9 RAD51-202ENST00000382643 1588 ntTSL 2 BASIC14.05□□□□□ -0.162e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-212ENST00000467339 515 ntTSL 213.99□□□□□ -0.172e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.192e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC13.81□□□□□ -0.22e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP5C-209ENST00000492109 848 ntTSL 212.99□□□□□ -0.332e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-203ENST00000415783 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.472e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-210ENST00000600528 261 ntTSL 311.91□□□□□ -0.55e-12■□□□□ 8.3
DDX55Q8NHQ9 TIA1-205ENST00000433529 4647 ntTSL 2 BASIC11.69□□□□□ -0.542e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-204ENST00000416149 821 ntTSL 1 (best) BASIC11.01□□□□□ -0.652e-6■□□□□ 8.3
DDX55Q8NHQ9 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.762e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-206ENST00000478389 3581 ntTSL 29.01□□□□□ -0.975e-12■□□□□ 8.3
DDX55Q8NHQ9 TIA1-211ENST00000477044 904 ntTSL 58.91□□□□□ -0.982e-6■□□□□ 8.3
DDX55Q8NHQ9 ILF2-204ENST00000480213 1008 ntTSL 58.82□□□□□ -12e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-218ENST00000496096 511 ntTSL 38.63□□□□□ -1.032e-6■□□□□ 8.3
DDX55Q8NHQ9 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.052e-6■□□□□ 8.3
DDX55Q8NHQ9 NDUFAB1-204ENST00000567761 520 ntTSL 38.24□□□□□ -1.092e-6■□□□□ 8.3
DDX55Q8NHQ9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC8.22□□□□□ -1.092e-6■□□□□ 8.3
DDX55Q8NHQ9 AP2S1-206ENST00000598027 355 ntTSL 28.05□□□□□ -1.122e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.84□□□□□ -1.152e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP2CB-207ENST00000520500 603 ntTSL 47.69□□□□□ -1.182e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-207ENST00000454815 911 ntTSL 56.12□□□□□ -1.432e-6■□□□□ 8.3
DDX55Q8NHQ9 CPOX-203ENST00000512905 593 ntTSL 55.32□□□□□ -1.562e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP2CB-202ENST00000518243 577 ntTSL 35.02□□□□□ -1.612e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-212ENST00000477415 510 ntTSL 24.76□□□□□ -1.652e-6■□□□□ 8.3
DDX55Q8NHQ9 TIA1-202ENST00000361692 543 ntTSL 52.54□□□□□ -22e-6■□□□□ 8.3
DDX55Q8NHQ9 ENO1-202ENST00000464920 2266 ntTSL 1 (best)14.76□□□□□ -0.052e-24■□□□□ 8.2
DDX55Q8NHQ9 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.252e-24■□□□□ 8.2
DDX55Q8NHQ9 NARF-220ENST00000582907 1454 ntTSL 517.34■□□□□ 0.374e-25■□□□□ 8.2
DDX55Q8NHQ9 NARF-226ENST00000584513 500 ntTSL 312.14□□□□□ -0.474e-25■□□□□ 8.2
DDX55Q8NHQ9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.06■■■□□ 2.561e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.441e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-212ENST00000498355 1936 ntTSL 230.24■■■□□ 2.431e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.1■■■□□ 2.251e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.161e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-205ENST00000446405 436 ntTSL 323.57■■□□□ 1.361e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-206ENST00000460011 1260 ntTSL 1 (best)23.55■■□□□ 1.361e-15■□□□□ 8.2
DDX55Q8NHQ9 FTCD-209ENST00000483568 398 ntTSL 512.82□□□□□ -0.361e-15■□□□□ 8.2
DDX55Q8NHQ9 PLD3-213ENST00000488311 750 ntTSL 215.23■□□□□ 0.031e-19■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-207ENST00000461195 787 ntTSL 227.48■■□□□ 1.991e-6■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-204ENST00000422344 631 ntTSL 326.79■■□□□ 1.881e-6■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-203ENST00000394925 702 ntTSL 226.62■■□□□ 1.851e-6■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-216ENST00000586813 789 ntTSL 324.25■■□□□ 1.471e-6■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-212ENST00000498540 748 ntTSL 318.62■□□□□ 0.571e-6■□□□□ 8.2
DDX55Q8NHQ9 SEMA4G-209ENST00000519649 2024 ntTSL 516.65■□□□□ 0.263e-12■□□□□ 8.2
DDX55Q8NHQ9 TRAF4-210ENST00000475329 544 ntTSL 315.7■□□□□ 0.11e-6■□□□□ 8.2
DDX55Q8NHQ9 DVL1-208ENST00000634054 828 ntTSL 526.83■■□□□ 1.892e-7■□□□□ 8.2
DDX55Q8NHQ9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.394e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-202ENST00000578532 684 ntTSL 223.24■■□□□ 1.314e-54■□□□□ 8.2
DDX55Q8NHQ9 RPL17-218ENST00000583637 758 ntTSL 323.24■■□□□ 1.314e-54■□□□□ 8.2
Retrieved 100 of 15,504 protein–RNA pairs in 82.3 ms