RNA–Protein interactions for RNA: ENST00000616407.1

PPP4R3B-206, Transcript of protein phosphatase 4 regulatory subunit 3B, humanhuman

TSL 1 (best) BASIC

Gene PPP4R3B, Length 4,385 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3B-206ENST00000616407 NISCHQ9Y2I1 1504 aa25.23■■□□□ 1.63
PPP4R3B-206ENST00000616407 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
PPP4R3B-206ENST00000616407 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
PPP4R3B-206ENST00000616407 SUPT5HO00267 1087 aaKnown RBP22.76■■□□□ 1.23
PPP4R3B-206ENST00000616407 EHMT2Q96KQ7 1210 aa21.45■■□□□ 1.02
PPP4R3B-206ENST00000616407 FAM9AQ8IZU1 332 aaPredicted RBP21.27■□□□□ 0.99
PPP4R3B-206ENST00000616407 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
PPP4R3B-206ENST00000616407 CHIC1Q5VXU3 224 aa21.08■□□□□ 0.97
PPP4R3B-206ENST00000616407 ZCCHC6Q5VYS8 1495 aaKnown RBP21.07■□□□□ 0.96
PPP4R3B-206ENST00000616407 PCGF6Q9BYE7 350 aa21.04■□□□□ 0.96
PPP4R3B-206ENST00000616407 ABCC9O60706 1549 aa21.01■□□□□ 0.95
PPP4R3B-206ENST00000616407 CCDC180Q9P1Z9 1646 aa20.97■□□□□ 0.95
PPP4R3B-206ENST00000616407 LOC105371045A0A1W2PR82 267 aa20.78■□□□□ 0.92
PPP4R3B-206ENST00000616407 TTBK1Q5TCY1 1321 aaPredicted RBP20.67■□□□□ 0.9
PPP4R3B-206ENST00000616407 APLP2Q06481 763 aa20.55■□□□□ 0.88
PPP4R3B-206ENST00000616407 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
PPP4R3B-206ENST00000616407 UBTFP17480 764 aaKnown RBP20.52■□□□□ 0.87
PPP4R3B-206ENST00000616407 RANGAP1P46060 587 aaPredicted RBP20.5■□□□□ 0.87
PPP4R3B-206ENST00000616407 SCRIBQ14160 1630 aa20.48■□□□□ 0.87
PPP4R3B-206ENST00000616407 PPARGC1BQ86YN6 1023 aaKnown RBP20.44■□□□□ 0.86
PPP4R3B-206ENST00000616407 TRIM26Q12899 539 aaPredicted RBP20.39■□□□□ 0.85
PPP4R3B-206ENST00000616407 HRCP23327 699 aa20.3■□□□□ 0.84
PPP4R3B-206ENST00000616407 ZEB1P37275 1124 aaPredicted RBP20.25■□□□□ 0.83
PPP4R3B-206ENST00000616407 CCER1Q8TC90 406 aaPredicted RBP20.24■□□□□ 0.83
PPP4R3B-206ENST00000616407 DCAF1Q9Y4B6 1507 aa20.22■□□□□ 0.83
PPP4R3B-206ENST00000616407 RSF1Q96T23 1441 aaPredicted RBP20.1■□□□□ 0.81
PPP4R3B-206ENST00000616407 ATP1B4Q9UN42 357 aaPredicted RBP20.03■□□□□ 0.8
PPP4R3B-206ENST00000616407 MYO15BQ96JP2 1530 aa20.02■□□□□ 0.8
PPP4R3B-206ENST00000616407 NACADO15069 1562 aa20.01■□□□□ 0.79
PPP4R3B-206ENST00000616407 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
PPP4R3B-206ENST00000616407 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
PPP4R3B-206ENST00000616407 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
PPP4R3B-206ENST00000616407 HNRNPUL2Q1KMD3 747 aaKnown RBP19.8■□□□□ 0.76
PPP4R3B-206ENST00000616407 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.79■□□□□ 0.76
PPP4R3B-206ENST00000616407 ITGAEP38570 1179 aa19.69■□□□□ 0.74
PPP4R3B-206ENST00000616407 MROH2BQ7Z745 1585 aa19.62■□□□□ 0.73
PPP4R3B-206ENST00000616407 BAZ1AQ9NRL2 1556 aaPredicted RBP19.59■□□□□ 0.73
PPP4R3B-206ENST00000616407 CENPBP07199 599 aaPredicted RBP19.56■□□□□ 0.72
PPP4R3B-206ENST00000616407 YTHDC1Q96MU7 727 aaKnown RBP19.45■□□□□ 0.7
PPP4R3B-206ENST00000616407 BAZ1BQ9UIG0 1483 aaKnown RBP19.38■□□□□ 0.69
PPP4R3B-206ENST00000616407 WRNQ14191 1432 aaPredicted RBP eCLIP19.36■□□□□ 0.69
PPP4R3B-206ENST00000616407 WIZO95785 1651 aa19.36■□□□□ 0.69
PPP4R3B-206ENST00000616407 P3H3Q8IVL6 736 aa19.33■□□□□ 0.69
PPP4R3B-206ENST00000616407 CCDC88BA6NC98 1476 aa19.33■□□□□ 0.68
PPP4R3B-206ENST00000616407 FAM50AQ14320 339 aaKnown RBP19.32■□□□□ 0.68
PPP4R3B-206ENST00000616407 DIEXFQ68CQ4 756 aaKnown RBP19.32■□□□□ 0.68
PPP4R3B-206ENST00000616407 EEA1Q15075 1411 aa19.28■□□□□ 0.68
PPP4R3B-206ENST00000616407 CEP162Q5TB80 1403 aa19.25■□□□□ 0.67
PPP4R3B-206ENST00000616407 PELP1Q8IZL8 1130 aaKnown RBP19.25■□□□□ 0.67
PPP4R3B-206ENST00000616407 SOGA1O94964 1423 aa19.23■□□□□ 0.67
PPP4R3B-206ENST00000616407 ABCC8Q09428 1581 aa19.21■□□□□ 0.67
PPP4R3B-206ENST00000616407 CLIP1P30622 1438 aa19.2■□□□□ 0.66
PPP4R3B-206ENST00000616407 GOLGA3Q08378 1498 aa19.19■□□□□ 0.66
PPP4R3B-206ENST00000616407 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
PPP4R3B-206ENST00000616407 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
PPP4R3B-206ENST00000616407 SMARCA4P51532 1647 aa19.1■□□□□ 0.65
PPP4R3B-206ENST00000616407 NEUROD1Q13562 356 aa19.09■□□□□ 0.65
PPP4R3B-206ENST00000616407 ZNF316A6NFI3 1004 aaPredicted RBP19.08■□□□□ 0.65
PPP4R3B-206ENST00000616407 CEP164Q9UPV0 1460 aa19.07■□□□□ 0.64
PPP4R3B-206ENST00000616407 FBLN2P98095 1184 aa19.06■□□□□ 0.64
PPP4R3B-206ENST00000616407 ARID3CA6NKF2 412 aa19.03■□□□□ 0.64
PPP4R3B-206ENST00000616407 SMARCA2P51531 1590 aa19.02■□□□□ 0.64
PPP4R3B-206ENST00000616407 KIF27Q86VH2 1401 aa19■□□□□ 0.63
PPP4R3B-206ENST00000616407 ATAD2BQ9ULI0 1458 aa19■□□□□ 0.63
PPP4R3B-206ENST00000616407 TRIM52Q96A61 297 aa18.98■□□□□ 0.63
PPP4R3B-206ENST00000616407 RUSC2Q8N2Y8 1516 aa18.88■□□□□ 0.61
PPP4R3B-206ENST00000616407 POLR3GLQ9BT43 218 aa18.87■□□□□ 0.61
PPP4R3B-206ENST00000616407 NEFLP07196 543 aa18.86■□□□□ 0.61
PPP4R3B-206ENST00000616407 MYT1LQ9UL68 1186 aa18.82■□□□□ 0.6
PPP4R3B-206ENST00000616407 CUX2O14529 1486 aa18.81■□□□□ 0.6
PPP4R3B-206ENST00000616407 CNGB1Q14028 1251 aaPredicted RBP18.79■□□□□ 0.6
PPP4R3B-206ENST00000616407 GTF3C3Q9Y5Q9 886 aa18.77■□□□□ 0.6
PPP4R3B-206ENST00000616407 CARMIL1Q5VZK9 1371 aa18.76■□□□□ 0.59
PPP4R3B-206ENST00000616407 VPS8Q8N3P4 1428 aa18.75■□□□□ 0.59
PPP4R3B-206ENST00000616407 MTUS2Q5JR59 1369 aa18.74■□□□□ 0.59
PPP4R3B-206ENST00000616407 ACIN1Q9UKV3 1341 aaKnown RBP18.73■□□□□ 0.59
PPP4R3B-206ENST00000616407 CDK11AQ9UQ88 783 aaPredicted RBP18.72■□□□□ 0.59
PPP4R3B-206ENST00000616407 ZNF777Q9ULD5 760 aaPredicted RBP18.72■□□□□ 0.59
PPP4R3B-206ENST00000616407 CADPSQ9ULU8 1353 aa18.7■□□□□ 0.58
PPP4R3B-206ENST00000616407 RAPGEF2Q9Y4G8 1499 aa18.7■□□□□ 0.58
PPP4R3B-206ENST00000616407 CHIC2Q9UKJ5 165 aa18.69■□□□□ 0.58
PPP4R3B-206ENST00000616407 KANK4Q5T7N3 995 aaPredicted RBP18.67■□□□□ 0.58
PPP4R3B-206ENST00000616407 ZNF326Q5BKZ1 582 aaKnown RBP18.65■□□□□ 0.58
PPP4R3B-206ENST00000616407 CHMP7Q8WUX9 453 aaPredicted RBP18.63■□□□□ 0.57
PPP4R3B-206ENST00000616407 ANP32CO43423 234 aa18.62■□□□□ 0.57
PPP4R3B-206ENST00000616407 TONSLQ96HA7 1378 aa18.6■□□□□ 0.57
PPP4R3B-206ENST00000616407 NCAPD3P42695 1498 aa18.59■□□□□ 0.57
PPP4R3B-206ENST00000616407 MIER1Q8N108 512 aa18.58■□□□□ 0.57
PPP4R3B-206ENST00000616407 CCNB3Q8WWL7 1395 aa18.57■□□□□ 0.56
PPP4R3B-206ENST00000616407 BICRAQ9NZM4 1560 aa18.56■□□□□ 0.56
PPP4R3B-206ENST00000616407 TDRD9Q8NDG6 1382 aaKnown RBP18.55■□□□□ 0.56
PPP4R3B-206ENST00000616407 DDX10Q13206 875 aaKnown RBP18.55■□□□□ 0.56
PPP4R3B-206ENST00000616407 EIF4G1Q04637 1599 aaKnown RBP18.54■□□□□ 0.56
PPP4R3B-206ENST00000616407 RRP7BPQ9NSQ0 103 aa18.53■□□□□ 0.56
PPP4R3B-206ENST00000616407 FHAD1B1AJZ9 1412 aa18.53■□□□□ 0.56
PPP4R3B-206ENST00000616407 HIRIP3Q9BW71 556 aaPredicted RBP18.49■□□□□ 0.55
PPP4R3B-206ENST00000616407 PDS5BQ9NTI5 1447 aa18.48■□□□□ 0.55
PPP4R3B-206ENST00000616407 SYNJ1O43426 1573 aa18.46■□□□□ 0.55
PPP4R3B-206ENST00000616407 FANCD2Q9BXW9 1451 aa18.45■□□□□ 0.54
PPP4R3B-206ENST00000616407 SIN3AQ96ST3 1273 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms