Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 AC008677.1-201ENST00000519230 1561 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
HMGCS2P54868 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 AC107890.1-201ENST00000422478 521 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 BASP1P1-201ENST00000430708 665 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 AC109635.5-201ENST00000533593 962 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 AC026150.2-201ENST00000564693 1156 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 AL353732.1-201ENST00000569618 1459 ntBASIC19.7■□□□□ 0.74
HMGCS2P54868 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
HMGCS2P54868 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
HMGCS2P54868 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
HMGCS2P54868 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGCS2P54868 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 AC133963.1-201ENST00000504166 1679 ntBASIC19.69■□□□□ 0.74
HMGCS2P54868 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.69■□□□□ 0.74
HMGCS2P54868 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGCS2P54868 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 SPDYE14P-201ENST00000442619 822 ntBASIC19.69■□□□□ 0.74
HMGCS2P54868 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 KRT8P23-201ENST00000560090 1207 ntBASIC19.69■□□□□ 0.74
HMGCS2P54868 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.69■□□□□ 0.74
HMGCS2P54868 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.69■□□□□ 0.74
HMGCS2P54868 AL354751.1-201ENST00000412768 1863 ntBASIC19.69■□□□□ 0.74
HMGCS2P54868 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGCS2P54868 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGCS2P54868 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HMGCS2P54868 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGCS2P54868 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
HMGCS2P54868 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
HMGCS2P54868 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
HMGCS2P54868 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGCS2P54868 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGCS2P54868 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
HMGCS2P54868 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGCS2P54868 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGCS2P54868 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms