Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.7■□□□□ 0.26
HNF4AP41235 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HNF4AP41235 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
HNF4AP41235 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.69■□□□□ 0.26
HNF4AP41235 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.69■□□□□ 0.26
HNF4AP41235 ABCD1P5-201ENST00000445663 754 ntBASIC16.69■□□□□ 0.26
HNF4AP41235 UNC93B7-201ENST00000509439 705 ntBASIC16.69■□□□□ 0.26
HNF4AP41235 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 IFNL4P1-201ENST00000607083 540 ntBASIC16.69■□□□□ 0.26
HNF4AP41235 AP001269.4-201ENST00000609611 512 ntBASIC16.69■□□□□ 0.26
HNF4AP41235 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
HNF4AP41235 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.69■□□□□ 0.26
HNF4AP41235 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HNF4AP41235 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HNF4AP41235 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.69■□□□□ 0.26
HNF4AP41235 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 EGFEM1P-202ENST00000431685 1563 ntBASIC16.68■□□□□ 0.26
HNF4AP41235 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HNF4AP41235 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
HNF4AP41235 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.68■□□□□ 0.26
HNF4AP41235 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.68■□□□□ 0.26
HNF4AP41235 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 AC124947.2-201ENST00000547118 1133 ntBASIC16.68■□□□□ 0.26
HNF4AP41235 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.68■□□□□ 0.26
HNF4AP41235 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.68■□□□□ 0.26
HNF4AP41235 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.68■□□□□ 0.26
HNF4AP41235 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.68■□□□□ 0.26
HNF4AP41235 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.68■□□□□ 0.26
HNF4AP41235 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 SIGLEC16-201ENST00000599858 1437 ntBASIC16.68■□□□□ 0.26
HNF4AP41235 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
HNF4AP41235 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
HNF4AP41235 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HNF4AP41235 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HNF4AP41235 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.67■□□□□ 0.26
HNF4AP41235 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HNF4AP41235 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
HNF4AP41235 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms