Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 AC002347.1-201ENST00000569543 541 ntBASIC18.08■□□□□ 0.48
BDNFP23560 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 LTB4R2-202ENST00000528054 3092 ntBASIC18.08■□□□□ 0.48
BDNFP23560 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
BDNFP23560 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.08■□□□□ 0.48
BDNFP23560 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
BDNFP23560 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 YBX2P1-201ENST00000394192 760 ntBASIC18.07■□□□□ 0.48
BDNFP23560 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.07■□□□□ 0.48
BDNFP23560 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 AC096734.2-201ENST00000562054 433 ntBASIC18.07■□□□□ 0.48
BDNFP23560 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 AL513190.1-201ENST00000621254 727 ntBASIC18.07■□□□□ 0.48
BDNFP23560 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.07■□□□□ 0.48
BDNFP23560 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
BDNFP23560 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.07■□□□□ 0.48
BDNFP23560 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
BDNFP23560 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.06■□□□□ 0.48
BDNFP23560 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
BDNFP23560 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.06■□□□□ 0.48
BDNFP23560 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 OR6D1P-202ENST00000641007 5290 ntBASIC18.06■□□□□ 0.48
BDNFP23560 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.06■□□□□ 0.48
BDNFP23560 AC004832.2-201ENST00000426397 482 ntBASIC18.06■□□□□ 0.48
BDNFP23560 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.06■□□□□ 0.48
BDNFP23560 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.06■□□□□ 0.48
BDNFP23560 CXCL1P1-201ENST00000502804 216 ntBASIC18.06■□□□□ 0.48
BDNFP23560 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
BDNFP23560 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.06■□□□□ 0.48
BDNFP23560 AC006538.3-201ENST00000612495 578 ntBASIC18.06■□□□□ 0.48
BDNFP23560 AC004877.2-201ENST00000623941 599 ntBASIC18.06■□□□□ 0.48
BDNFP23560 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.06■□□□□ 0.48
BDNFP23560 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.06■□□□□ 0.48
BDNFP23560 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
BDNFP23560 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.06■□□□□ 0.48
BDNFP23560 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.05■□□□□ 0.48
BDNFP23560 AC002310.6-201ENST00000624451 1377 ntBASIC18.05■□□□□ 0.48
BDNFP23560 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
BDNFP23560 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
BDNFP23560 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.05■□□□□ 0.48
BDNFP23560 RHOQP3-201ENST00000437982 621 ntBASIC18.05■□□□□ 0.48
BDNFP23560 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
BDNFP23560 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.05■□□□□ 0.48
BDNFP23560 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.05■□□□□ 0.48
BDNFP23560 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.05■□□□□ 0.48
BDNFP23560 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.05■□□□□ 0.48
BDNFP23560 AC010327.4-202ENST00000591484 748 ntBASIC18.05■□□□□ 0.48
BDNFP23560 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.05■□□□□ 0.48
BDNFP23560 GPALPP1-207ENST00000611650 899 ntBASIC18.05■□□□□ 0.48
BDNFP23560 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms