Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.54■□□□□ 0.24
SEMA3DO95025 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.54■□□□□ 0.24
SEMA3DO95025 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SEMA3DO95025 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SEMA3DO95025 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.54■□□□□ 0.24
SEMA3DO95025 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SEMA3DO95025 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.53■□□□□ 0.24
SEMA3DO95025 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SEMA3DO95025 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.53■□□□□ 0.24
SEMA3DO95025 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.53■□□□□ 0.24
SEMA3DO95025 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.53■□□□□ 0.24
SEMA3DO95025 MIR3652-201ENST00000579335 131 ntBASIC16.53■□□□□ 0.24
SEMA3DO95025 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.53■□□□□ 0.24
SEMA3DO95025 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SEMA3DO95025 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
SEMA3DO95025 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SEMA3DO95025 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.52■□□□□ 0.24
SEMA3DO95025 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.52■□□□□ 0.24
SEMA3DO95025 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SEMA3DO95025 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SEMA3DO95025 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.52■□□□□ 0.24
SEMA3DO95025 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.52■□□□□ 0.24
SEMA3DO95025 AC124947.2-201ENST00000547118 1133 ntBASIC16.52■□□□□ 0.24
SEMA3DO95025 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.52■□□□□ 0.24
SEMA3DO95025 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SEMA3DO95025 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.52■□□□□ 0.24
SEMA3DO95025 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.52■□□□□ 0.23
SEMA3DO95025 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.52■□□□□ 0.23
SEMA3DO95025 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SEMA3DO95025 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
SEMA3DO95025 AL391005.1-201ENST00000623953 2435 ntBASIC16.51■□□□□ 0.23
SEMA3DO95025 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.51■□□□□ 0.23
SEMA3DO95025 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.51■□□□□ 0.23
SEMA3DO95025 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.51■□□□□ 0.23
SEMA3DO95025 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.51■□□□□ 0.23
SEMA3DO95025 ACTG1P4-201ENST00000425123 1122 ntBASIC16.51■□□□□ 0.23
SEMA3DO95025 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.51■□□□□ 0.23
SEMA3DO95025 AC106795.1-205ENST00000512851 1056 ntBASIC16.51■□□□□ 0.23
SEMA3DO95025 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SEMA3DO95025 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.51■□□□□ 0.23
SEMA3DO95025 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms