Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.51■□□□□ 0.39
TCRBV7S3A2A0A539 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 NUS1P1-201ENST00000446295 882 ntBASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 LINC00265-3P-201ENST00000447588 903 ntBASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 MINOS1P3-201ENST00000457048 203 ntBASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 Z69720.1-201ENST00000601483 472 ntBASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 AL645728.1-201ENST00000366221 2101 ntBASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.5■□□□□ 0.39
TCRBV7S3A2A0A539 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 IER3-202ENST00000376377 1350 ntBASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TCRBV7S3A2A0A539 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TCRBV7S3A2A0A539 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms