Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 HES4-204ENST00000484667 667 ntTSL 3 BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 AC007029.1-201ENST00000604183 313 ntBASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHB1Q9Y5F3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHB1Q9Y5F3 AL592293.1-201ENST00000502889 1188 ntBASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHB1Q9Y5F3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
PCDHB1Q9Y5F3 AC092803.2-201ENST00000564287 1899 ntBASIC24.17■■□□□ 1.46
PCDHB1Q9Y5F3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHB1Q9Y5F3 AC009831.1-201ENST00000580420 1582 ntBASIC24.17■■□□□ 1.46
PCDHB1Q9Y5F3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC24.17■■□□□ 1.46
PCDHB1Q9Y5F3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC24.17■■□□□ 1.46
PCDHB1Q9Y5F3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHB1Q9Y5F3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
PCDHB1Q9Y5F3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHB1Q9Y5F3 AC133552.2-201ENST00000619106 1032 ntBASIC24.16■■□□□ 1.46
PCDHB1Q9Y5F3 AC145676.1-201ENST00000514988 2004 ntBASIC24.16■■□□□ 1.46
PCDHB1Q9Y5F3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHB1Q9Y5F3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC24.14■■□□□ 1.46
PCDHB1Q9Y5F3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHB1Q9Y5F3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC24.14■■□□□ 1.45
PCDHB1Q9Y5F3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHB1Q9Y5F3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC24.14■■□□□ 1.45
PCDHB1Q9Y5F3 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.13■■□□□ 1.45
PCDHB1Q9Y5F3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
PCDHB1Q9Y5F3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB1Q9Y5F3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.13■■□□□ 1.45
PCDHB1Q9Y5F3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHB1Q9Y5F3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHB1Q9Y5F3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
PCDHB1Q9Y5F3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHB1Q9Y5F3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHB1Q9Y5F3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB1Q9Y5F3 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB1Q9Y5F3 DUSP8P4-201ENST00000399538 1761 ntBASIC24.11■■□□□ 1.45
PCDHB1Q9Y5F3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB1Q9Y5F3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHB1Q9Y5F3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC24.1■■□□□ 1.45
PCDHB1Q9Y5F3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 AL035685.1-201ENST00000636663 812 ntBASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHB1Q9Y5F3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB1Q9Y5F3 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB1Q9Y5F3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB1Q9Y5F3 AL451085.2-201ENST00000605085 799 ntBASIC24.08■■□□□ 1.45
PCDHB1Q9Y5F3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PCDHB1Q9Y5F3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.08■■□□□ 1.44
PCDHB1Q9Y5F3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
PCDHB1Q9Y5F3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.08■■□□□ 1.44
PCDHB1Q9Y5F3 SMPD5-203ENST00000639008 1464 ntBASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 AC025884.2-201ENST00000553429 711 ntBASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.07■■□□□ 1.44
PCDHB1Q9Y5F3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
PCDHB1Q9Y5F3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHB1Q9Y5F3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHB1Q9Y5F3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.05■■□□□ 1.44
PCDHB1Q9Y5F3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHB1Q9Y5F3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms