Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
USP42Q9H9J4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.2■■■□□ 2.58
USP42Q9H9J4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP42Q9H9J4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.19■■■□□ 2.58
USP42Q9H9J4 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP42Q9H9J4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.19■■■□□ 2.58
USP42Q9H9J4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
USP42Q9H9J4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
USP42Q9H9J4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP42Q9H9J4 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP42Q9H9J4 AC239859.2-201ENST00000444165 318 ntBASIC31.18■■■□□ 2.58
USP42Q9H9J4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
USP42Q9H9J4 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
USP42Q9H9J4 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
USP42Q9H9J4 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
USP42Q9H9J4 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.16■■■□□ 2.58
USP42Q9H9J4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
USP42Q9H9J4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
USP42Q9H9J4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
USP42Q9H9J4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.16■■■□□ 2.58
USP42Q9H9J4 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP42Q9H9J4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
USP42Q9H9J4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.15■■■□□ 2.58
USP42Q9H9J4 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
USP42Q9H9J4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.15■■■□□ 2.58
USP42Q9H9J4 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.15■■■□□ 2.58
USP42Q9H9J4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
USP42Q9H9J4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.14■■■□□ 2.58
USP42Q9H9J4 WHAMMP3-201ENST00000611636 1609 ntBASIC31.14■■■□□ 2.58
USP42Q9H9J4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.14■■■□□ 2.58
USP42Q9H9J4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.14■■■□□ 2.58
USP42Q9H9J4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USP42Q9H9J4 Z92544.1-202ENST00000571933 1220 ntBASIC31.13■■■□□ 2.57
USP42Q9H9J4 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USP42Q9H9J4 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.13■■■□□ 2.57
USP42Q9H9J4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
USP42Q9H9J4 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP42Q9H9J4 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
USP42Q9H9J4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP42Q9H9J4 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.12■■■□□ 2.57
USP42Q9H9J4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.12■■■□□ 2.57
USP42Q9H9J4 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
USP42Q9H9J4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC31.11■■■□□ 2.57
USP42Q9H9J4 LONRF2P2-201ENST00000439212 571 ntBASIC31.11■■■□□ 2.57
USP42Q9H9J4 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.11■■■□□ 2.57
USP42Q9H9J4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.1■■■□□ 2.57
USP42Q9H9J4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC31.1■■■□□ 2.57
USP42Q9H9J4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
USP42Q9H9J4 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC31.09■■■□□ 2.57
USP42Q9H9J4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
USP42Q9H9J4 RPS2P7-201ENST00000447334 885 ntBASIC31.09■■■□□ 2.57
USP42Q9H9J4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
USP42Q9H9J4 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC31.08■■■□□ 2.57
USP42Q9H9J4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
USP42Q9H9J4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
USP42Q9H9J4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.07■■■□□ 2.56
USP42Q9H9J4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
USP42Q9H9J4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
USP42Q9H9J4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
USP42Q9H9J4 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.06■■■□□ 2.56
USP42Q9H9J4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.06■■■□□ 2.56
USP42Q9H9J4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.06■■■□□ 2.56
USP42Q9H9J4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC31.06■■■□□ 2.56
USP42Q9H9J4 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
USP42Q9H9J4 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP42Q9H9J4 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
USP42Q9H9J4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.04■■■□□ 2.56
USP42Q9H9J4 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
USP42Q9H9J4 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
USP42Q9H9J4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC31.03■■■□□ 2.56
USP42Q9H9J4 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP42Q9H9J4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP42Q9H9J4 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP42Q9H9J4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC31.03■■■□□ 2.56
USP42Q9H9J4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP42Q9H9J4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
USP42Q9H9J4 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC31.02■■■□□ 2.56
USP42Q9H9J4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
USP42Q9H9J4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
USP42Q9H9J4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC31.02■■■□□ 2.56
USP42Q9H9J4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.56
USP42Q9H9J4 GRAMD4P7-201ENST00000578182 1232 ntBASIC31.01■■■□□ 2.56
USP42Q9H9J4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC31.01■■■□□ 2.56
USP42Q9H9J4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.01■■■□□ 2.55
USP42Q9H9J4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
USP42Q9H9J4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
USP42Q9H9J4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP42Q9H9J4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC31■■■□□ 2.55
USP42Q9H9J4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USP42Q9H9J4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
USP42Q9H9J4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
USP42Q9H9J4 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.99■■■□□ 2.55
USP42Q9H9J4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC30.98■■■□□ 2.55
USP42Q9H9J4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.98■■■□□ 2.55
USP42Q9H9J4 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP42Q9H9J4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
USP42Q9H9J4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
USP42Q9H9J4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC30.98■■■□□ 2.55
USP42Q9H9J4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
USP42Q9H9J4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms