Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
PTCHD1Q96NR3 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD1Q96NR3 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD1Q96NR3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD1Q96NR3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 AC129492.7-201ENST00000622992 756 ntBASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
PTCHD1Q96NR3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD1Q96NR3 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.23
PTCHD1Q96NR3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD1Q96NR3 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD1Q96NR3 AC004987.1-201ENST00000428627 508 ntBASIC22.74■■□□□ 1.23
PTCHD1Q96NR3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD1Q96NR3 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 ATP5G2P3-201ENST00000429083 425 ntBASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 AL033527.3-201ENST00000566366 1196 ntBASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.73■■□□□ 1.23
PTCHD1Q96NR3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 TSPY13P-201ENST00000338964 914 ntBASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 DUX4L9-201ENST00000449051 1259 ntBASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 SPCS2P3-201ENST00000500401 656 ntBASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
PTCHD1Q96NR3 DUX4L18-201ENST00000553347 1267 ntBASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 AC018755.3-202ENST00000596210 929 ntBASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD1Q96NR3 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
PTCHD1Q96NR3 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD1Q96NR3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
PTCHD1Q96NR3 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.69■■□□□ 1.22
PTCHD1Q96NR3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.69■■□□□ 1.22
PTCHD1Q96NR3 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCHD1Q96NR3 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD1Q96NR3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.68■■□□□ 1.22
PTCHD1Q96NR3 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.68■■□□□ 1.22
PTCHD1Q96NR3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PTCHD1Q96NR3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 MIR6765-201ENST00000614092 87 ntBASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC22.67■■□□□ 1.22
PTCHD1Q96NR3 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTCHD1Q96NR3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
PTCHD1Q96NR3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.66■■□□□ 1.22
PTCHD1Q96NR3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms