Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LINC00346Q8IVM7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.35■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.34■■□□□ 1.01
LINC00346Q8IVM7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LINC00346Q8IVM7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
LINC00346Q8IVM7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
LINC00346Q8IVM7 MIR639-201ENST00000384974 98 ntBASIC21.33■■□□□ 1.01
LINC00346Q8IVM7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
LINC00346Q8IVM7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LINC00346Q8IVM7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LINC00346Q8IVM7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.32■■□□□ 1
LINC00346Q8IVM7 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.32■■□□□ 1
LINC00346Q8IVM7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
LINC00346Q8IVM7 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.31■■□□□ 1
LINC00346Q8IVM7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LINC00346Q8IVM7 AC096887.2-201ENST00000623443 1957 ntBASIC21.3■■□□□ 1
LINC00346Q8IVM7 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
LINC00346Q8IVM7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC21.3■■□□□ 1
LINC00346Q8IVM7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.3■■□□□ 1
LINC00346Q8IVM7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.3■■□□□ 1
LINC00346Q8IVM7 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.3■■□□□ 1
LINC00346Q8IVM7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
LINC00346Q8IVM7 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.3■■□□□ 1
LINC00346Q8IVM7 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LINC00346Q8IVM7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LINC00346Q8IVM7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.29■■□□□ 1
LINC00346Q8IVM7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.29■■□□□ 1
LINC00346Q8IVM7 AL157400.5-201ENST00000507624 621 ntBASIC21.29■■□□□ 1
LINC00346Q8IVM7 AC060814.1-201ENST00000554326 538 ntBASIC21.29■■□□□ 1
LINC00346Q8IVM7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.29■■□□□ 1
LINC00346Q8IVM7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
LINC00346Q8IVM7 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LINC00346Q8IVM7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LINC00346Q8IVM7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC21.28■■□□□ 1
LINC00346Q8IVM7 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.28■■□□□ 1
LINC00346Q8IVM7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.28■■□□□ 1
LINC00346Q8IVM7 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.28■■□□□ 1
LINC00346Q8IVM7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LINC00346Q8IVM7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
LINC00346Q8IVM7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.27■■□□□ 1
LINC00346Q8IVM7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LINC00346Q8IVM7 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LINC00346Q8IVM7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LINC00346Q8IVM7 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LINC00346Q8IVM7 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LINC00346Q8IVM7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC21.25■□□□□ 0.99
LINC00346Q8IVM7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.24■□□□□ 0.99
LINC00346Q8IVM7 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.24■□□□□ 0.99
LINC00346Q8IVM7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.24■□□□□ 0.99
LINC00346Q8IVM7 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LINC00346Q8IVM7 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LINC00346Q8IVM7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LINC00346Q8IVM7 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.23■□□□□ 0.99
LINC00346Q8IVM7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LINC00346Q8IVM7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
LINC00346Q8IVM7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LINC00346Q8IVM7 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LINC00346Q8IVM7 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.22■□□□□ 0.99
LINC00346Q8IVM7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.22■□□□□ 0.99
LINC00346Q8IVM7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC00346Q8IVM7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LINC00346Q8IVM7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LINC00346Q8IVM7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC00346Q8IVM7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms