Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.08
MSH6P52701 AC021242.3-201ENST00000607598 1377 ntBASIC34.26■■■■□ 3.07
MSH6P52701 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
MSH6P52701 KRT18P24-201ENST00000344739 1156 ntBASIC34.25■■■■□ 3.07
MSH6P52701 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC34.25■■■■□ 3.07
MSH6P52701 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC34.24■■■■□ 3.07
MSH6P52701 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC34.24■■■■□ 3.07
MSH6P52701 AC005837.3-201ENST00000612163 286 ntBASIC34.24■■■■□ 3.07
MSH6P52701 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC34.24■■■■□ 3.07
MSH6P52701 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC34.24■■■■□ 3.07
MSH6P52701 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC34.23■■■■□ 3.07
MSH6P52701 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
MSH6P52701 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
MSH6P52701 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC34.23■■■■□ 3.07
MSH6P52701 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC34.23■■■■□ 3.07
MSH6P52701 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC34.23■■■■□ 3.07
MSH6P52701 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC34.23■■■■□ 3.07
MSH6P52701 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC34.22■■■■□ 3.07
MSH6P52701 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC34.22■■■■□ 3.07
MSH6P52701 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
MSH6P52701 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
MSH6P52701 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC34.21■■■■□ 3.07
MSH6P52701 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC34.21■■■■□ 3.07
MSH6P52701 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC34.21■■■■□ 3.07
MSH6P52701 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC34.2■■■■□ 3.07
MSH6P52701 AC092666.2-201ENST00000613287 246 ntBASIC34.2■■■■□ 3.07
MSH6P52701 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC34.2■■■■□ 3.06
MSH6P52701 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC34.2■■■■□ 3.06
MSH6P52701 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
MSH6P52701 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
MSH6P52701 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
MSH6P52701 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC34.19■■■■□ 3.06
MSH6P52701 AP002414.2-202ENST00000590929 1450 ntBASIC34.19■■■■□ 3.06
MSH6P52701 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC34.18■■■■□ 3.06
MSH6P52701 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC34.18■■■■□ 3.06
MSH6P52701 AL117332.1-201ENST00000622628 974 ntBASIC34.18■■■■□ 3.06
MSH6P52701 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC34.17■■■■□ 3.06
MSH6P52701 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC34.17■■■■□ 3.06
MSH6P52701 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC34.16■■■■□ 3.06
MSH6P52701 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
MSH6P52701 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
MSH6P52701 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC34.16■■■■□ 3.06
MSH6P52701 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC34.16■■■■□ 3.06
MSH6P52701 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC34.15■■■■□ 3.06
MSH6P52701 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
MSH6P52701 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC34.15■■■■□ 3.06
MSH6P52701 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
MSH6P52701 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
MSH6P52701 AC096631.2-201ENST00000436136 790 ntBASIC34.15■■■■□ 3.06
MSH6P52701 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
MSH6P52701 AC092028.1-203ENST00000608262 953 ntBASIC34.15■■■■□ 3.06
MSH6P52701 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
MSH6P52701 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
MSH6P52701 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC34.14■■■■□ 3.06
MSH6P52701 RARRES2P6-201ENST00000567333 442 ntBASIC34.14■■■■□ 3.06
MSH6P52701 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC34.14■■■■□ 3.06
MSH6P52701 GUK1-205ENST00000366722 850 ntTSL 3 BASIC34.13■■■■□ 3.05
MSH6P52701 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC34.13■■■■□ 3.05
MSH6P52701 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC34.13■■■■□ 3.05
MSH6P52701 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC34.13■■■■□ 3.05
MSH6P52701 WHAMMP3-201ENST00000611636 1609 ntBASIC34.12■■■■□ 3.05
MSH6P52701 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC34.11■■■■□ 3.05
MSH6P52701 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC34.11■■■■□ 3.05
MSH6P52701 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC34.11■■■■□ 3.05
MSH6P52701 ST7-AS1-201ENST00000456775 1889 ntBASIC34.11■■■■□ 3.05
MSH6P52701 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC34.11■■■■□ 3.05
MSH6P52701 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
MSH6P52701 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC34.11■■■■□ 3.05
MSH6P52701 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC34.11■■■■□ 3.05
MSH6P52701 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC34.1■■■■□ 3.05
MSH6P52701 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
MSH6P52701 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC34.1■■■■□ 3.05
MSH6P52701 AC133561.4-201ENST00000566112 224 ntBASIC34.1■■■■□ 3.05
MSH6P52701 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC34.09■■■■□ 3.05
MSH6P52701 MIR3621-201ENST00000580529 85 ntBASIC34.09■■■■□ 3.05
MSH6P52701 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
MSH6P52701 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC34.09■■■■□ 3.05
MSH6P52701 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
MSH6P52701 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
MSH6P52701 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
MSH6P52701 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
MSH6P52701 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
MSH6P52701 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC34.06■■■■□ 3.04
MSH6P52701 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
MSH6P52701 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC34.06■■■■□ 3.04
MSH6P52701 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC34.06■■■■□ 3.04
MSH6P52701 AC120024.1-201ENST00000562672 995 ntBASIC34.06■■■■□ 3.04
MSH6P52701 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC34.06■■■■□ 3.04
MSH6P52701 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC34.06■■■■□ 3.04
MSH6P52701 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC34.06■■■■□ 3.04
MSH6P52701 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC34.05■■■■□ 3.04
MSH6P52701 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC34.05■■■■□ 3.04
MSH6P52701 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
MSH6P52701 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC34.03■■■■□ 3.04
MSH6P52701 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC34.03■■■■□ 3.04
MSH6P52701 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC34.03■■■■□ 3.04
MSH6P52701 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
MSH6P52701 KRT18P10-201ENST00000388836 1287 ntBASIC34.02■■■■□ 3.04
MSH6P52701 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC34.02■■■■□ 3.04
MSH6P52701 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC34.02■■■■□ 3.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms