Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC32.53■■■□□ 2.8
CSB-PGBD3P0DP91 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
CSB-PGBD3P0DP91 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CSB-PGBD3P0DP91 MIR4787-201ENST00000607364 84 ntBASIC32.52■■■□□ 2.8
CSB-PGBD3P0DP91 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
CSB-PGBD3P0DP91 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
CSB-PGBD3P0DP91 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC32.51■■■□□ 2.8
CSB-PGBD3P0DP91 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.8
CSB-PGBD3P0DP91 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
CSB-PGBD3P0DP91 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC32.51■■■□□ 2.79
CSB-PGBD3P0DP91 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
CSB-PGBD3P0DP91 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
CSB-PGBD3P0DP91 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
CSB-PGBD3P0DP91 BX664725.1-201ENST00000438252 379 ntBASIC32.5■■■□□ 2.79
CSB-PGBD3P0DP91 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC32.5■■■□□ 2.79
CSB-PGBD3P0DP91 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC32.5■■■□□ 2.79
CSB-PGBD3P0DP91 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 LSM7-203ENST00000585409 512 ntTSL 2 BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC32.49■■■□□ 2.79
CSB-PGBD3P0DP91 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC32.48■■■□□ 2.79
CSB-PGBD3P0DP91 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC32.48■■■□□ 2.79
CSB-PGBD3P0DP91 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC32.48■■■□□ 2.79
CSB-PGBD3P0DP91 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
CSB-PGBD3P0DP91 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CSB-PGBD3P0DP91 PROC-203ENST00000409048 1586 ntTSL 5 BASIC32.47■■■□□ 2.79
CSB-PGBD3P0DP91 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC32.47■■■□□ 2.79
CSB-PGBD3P0DP91 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CSB-PGBD3P0DP91 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
CSB-PGBD3P0DP91 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC32.46■■■□□ 2.79
CSB-PGBD3P0DP91 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
CSB-PGBD3P0DP91 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC32.46■■■□□ 2.79
CSB-PGBD3P0DP91 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC32.46■■■□□ 2.79
CSB-PGBD3P0DP91 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
CSB-PGBD3P0DP91 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
CSB-PGBD3P0DP91 MIR935-201ENST00000401179 91 ntBASIC32.45■■■□□ 2.79
CSB-PGBD3P0DP91 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC32.45■■■□□ 2.79
CSB-PGBD3P0DP91 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
CSB-PGBD3P0DP91 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
CSB-PGBD3P0DP91 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
CSB-PGBD3P0DP91 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 UNC93B8-201ENST00000511903 705 ntBASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CSB-PGBD3P0DP91 AC022616.5-201ENST00000518796 181 ntBASIC32.42■■■□□ 2.78
CSB-PGBD3P0DP91 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CSB-PGBD3P0DP91 PEMT-206ENST00000435340 960 ntTSL 5 BASIC32.41■■■□□ 2.78
CSB-PGBD3P0DP91 KRT16P3-201ENST00000439127 1283 ntBASIC32.41■■■□□ 2.78
CSB-PGBD3P0DP91 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CSB-PGBD3P0DP91 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
CSB-PGBD3P0DP91 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
CSB-PGBD3P0DP91 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC32.4■■■□□ 2.78
CSB-PGBD3P0DP91 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC32.4■■■□□ 2.78
CSB-PGBD3P0DP91 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC32.4■■■□□ 2.78
CSB-PGBD3P0DP91 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
CSB-PGBD3P0DP91 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 KRT18P10-201ENST00000388836 1287 ntBASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
CSB-PGBD3P0DP91 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC32.37■■■□□ 2.77
CSB-PGBD3P0DP91 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
CSB-PGBD3P0DP91 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
CSB-PGBD3P0DP91 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
CSB-PGBD3P0DP91 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC32.37■■■□□ 2.77
CSB-PGBD3P0DP91 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
CSB-PGBD3P0DP91 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
CSB-PGBD3P0DP91 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC32.36■■■□□ 2.77
CSB-PGBD3P0DP91 AL449106.1-201ENST00000608517 1980 ntBASIC32.36■■■□□ 2.77
CSB-PGBD3P0DP91 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
CSB-PGBD3P0DP91 KRT18P24-201ENST00000344739 1156 ntBASIC32.35■■■□□ 2.77
CSB-PGBD3P0DP91 TSPY9P-201ENST00000440215 945 ntBASIC32.35■■■□□ 2.77
CSB-PGBD3P0DP91 TSPY11P-201ENST00000442607 1045 ntBASIC32.35■■■□□ 2.77
CSB-PGBD3P0DP91 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CSB-PGBD3P0DP91 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CSB-PGBD3P0DP91 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CSB-PGBD3P0DP91 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.33■■■□□ 2.77
CSB-PGBD3P0DP91 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC32.33■■■□□ 2.77
CSB-PGBD3P0DP91 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC32.33■■■□□ 2.77
CSB-PGBD3P0DP91 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC32.33■■■□□ 2.77
CSB-PGBD3P0DP91 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC32.33■■■□□ 2.77
CSB-PGBD3P0DP91 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.32■■■□□ 2.76
CSB-PGBD3P0DP91 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC32.31■■■□□ 2.76
CSB-PGBD3P0DP91 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC32.31■■■□□ 2.76
CSB-PGBD3P0DP91 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC32.3■■■□□ 2.76
CSB-PGBD3P0DP91 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC32.3■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms