Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CXCL1P09341 AC097639.1-201ENST00000565519 1891 ntBASIC18.69■□□□□ 0.58
CXCL1P09341 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CXCL1P09341 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.69■□□□□ 0.58
CXCL1P09341 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CXCL1P09341 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.68■□□□□ 0.58
CXCL1P09341 AP004609.3-201ENST00000610705 1884 ntBASIC18.68■□□□□ 0.58
CXCL1P09341 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CXCL1P09341 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CXCL1P09341 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CXCL1P09341 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CXCL1P09341 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.67■□□□□ 0.58
CXCL1P09341 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC18.67■□□□□ 0.58
CXCL1P09341 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CXCL1P09341 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.66■□□□□ 0.58
CXCL1P09341 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CXCL1P09341 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CXCL1P09341 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CXCL1P09341 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CXCL1P09341 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CXCL1P09341 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC18.66■□□□□ 0.58
CXCL1P09341 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CXCL1P09341 AC018358.1-201ENST00000631079 1402 ntBASIC18.66■□□□□ 0.58
CXCL1P09341 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.66■□□□□ 0.58
CXCL1P09341 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
CXCL1P09341 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
CXCL1P09341 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.65■□□□□ 0.58
CXCL1P09341 DUSP8P5-201ENST00000422884 1815 ntBASIC18.65■□□□□ 0.58
CXCL1P09341 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL1P09341 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL1P09341 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL1P09341 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CXCL1P09341 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.64■□□□□ 0.58
CXCL1P09341 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
CXCL1P09341 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CXCL1P09341 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL1P09341 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL1P09341 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CXCL1P09341 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL1P09341 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CXCL1P09341 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CXCL1P09341 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CXCL1P09341 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL1P09341 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL1P09341 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CXCL1P09341 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL1P09341 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.62■□□□□ 0.57
CXCL1P09341 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC18.62■□□□□ 0.57
CXCL1P09341 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CXCL1P09341 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CXCL1P09341 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 LINC01124-201ENST00000409786 2117 ntBASIC18.61■□□□□ 0.57
CXCL1P09341 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CXCL1P09341 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL1P09341 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL1P09341 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CXCL1P09341 SETD8P1-201ENST00000623146 1180 ntBASIC18.6■□□□□ 0.57
CXCL1P09341 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CXCL1P09341 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL1P09341 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL1P09341 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL1P09341 RARRES2P7-201ENST00000567349 469 ntBASIC18.59■□□□□ 0.57
CXCL1P09341 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CXCL1P09341 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.58■□□□□ 0.57
CXCL1P09341 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CXCL1P09341 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.58■□□□□ 0.57
CXCL1P09341 EBPL-202ENST00000378268 680 ntTSL 3 BASIC18.58■□□□□ 0.56
CXCL1P09341 WHAMMP3-201ENST00000611636 1609 ntBASIC18.58■□□□□ 0.56
CXCL1P09341 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL1P09341 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL1P09341 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CXCL1P09341 MEST-211ENST00000437945 1455 ntTSL 5 BASIC18.58■□□□□ 0.56
CXCL1P09341 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL1P09341 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.57■□□□□ 0.56
CXCL1P09341 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL1P09341 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
CXCL1P09341 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
CXCL1P09341 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL1P09341 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL1P09341 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CXCL1P09341 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CXCL1P09341 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC18.56■□□□□ 0.56
CXCL1P09341 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms