Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
MT-ND4P03905 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND4P03905 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND4P03905 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND4P03905 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND4P03905 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.88■□□□□ 0.93
MT-ND4P03905 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
MT-ND4P03905 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.87■□□□□ 0.93
MT-ND4P03905 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MT-ND4P03905 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.87■□□□□ 0.93
MT-ND4P03905 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MT-ND4P03905 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 AC142472.1-201ENST00000612013 1741 ntBASIC20.86■□□□□ 0.93
MT-ND4P03905 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MT-ND4P03905 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.86■□□□□ 0.93
MT-ND4P03905 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.85■□□□□ 0.93
MT-ND4P03905 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 AC022211.4-201ENST00000625094 2161 ntBASIC20.85■□□□□ 0.93
MT-ND4P03905 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 RPS2P35-201ENST00000443417 897 ntBASIC20.85■□□□□ 0.93
MT-ND4P03905 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MT-ND4P03905 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
MT-ND4P03905 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.84■□□□□ 0.93
MT-ND4P03905 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
MT-ND4P03905 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.84■□□□□ 0.93
MT-ND4P03905 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
MT-ND4P03905 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MT-ND4P03905 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
MT-ND4P03905 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MT-ND4P03905 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MT-ND4P03905 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
MT-ND4P03905 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
MT-ND4P03905 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MT-ND4P03905 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.83■□□□□ 0.93
MT-ND4P03905 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.83■□□□□ 0.92
MT-ND4P03905 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.83■□□□□ 0.92
MT-ND4P03905 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
MT-ND4P03905 AC010501.1-201ENST00000606270 1962 ntBASIC20.83■□□□□ 0.92
MT-ND4P03905 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.83■□□□□ 0.92
MT-ND4P03905 AC012676.1-201ENST00000574705 1949 ntBASIC20.82■□□□□ 0.92
MT-ND4P03905 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MT-ND4P03905 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MT-ND4P03905 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MT-ND4P03905 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MT-ND4P03905 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
MT-ND4P03905 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.81■□□□□ 0.92
MT-ND4P03905 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.81■□□□□ 0.92
MT-ND4P03905 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
MT-ND4P03905 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.81■□□□□ 0.92
MT-ND4P03905 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
MT-ND4P03905 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MT-ND4P03905 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MT-ND4P03905 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.8■□□□□ 0.92
MT-ND4P03905 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.8■□□□□ 0.92
MT-ND4P03905 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MT-ND4P03905 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.79■□□□□ 0.92
MT-ND4P03905 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MT-ND4P03905 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.79■□□□□ 0.92
MT-ND4P03905 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.79■□□□□ 0.92
MT-ND4P03905 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
MT-ND4P03905 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MT-ND4P03905 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC20.78■□□□□ 0.92
MT-ND4P03905 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
MT-ND4P03905 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MT-ND4P03905 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MT-ND4P03905 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MT-ND4P03905 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MT-ND4P03905 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MT-ND4P03905 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
MT-ND4P03905 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.77■□□□□ 0.92
MT-ND4P03905 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MT-ND4P03905 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MT-ND4P03905 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.77■□□□□ 0.92
MT-ND4P03905 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
MT-ND4P03905 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.91
MT-ND4P03905 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
MT-ND4P03905 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MT-ND4P03905 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MT-ND4P03905 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MT-ND4P03905 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MT-ND4P03905 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms