Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 MIR6724-4-201ENST00000617390 92 ntBASIC23.62■■□□□ 1.37
CACNA1AO00555 MIR6724-3-201ENST00000622482 92 ntBASIC23.62■■□□□ 1.37
CACNA1AO00555 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC23.62■■□□□ 1.37
CACNA1AO00555 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.62■■□□□ 1.37
CACNA1AO00555 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.62■■□□□ 1.37
CACNA1AO00555 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.62■■□□□ 1.37
CACNA1AO00555 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1AO00555 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1AO00555 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.61■■□□□ 1.37
CACNA1AO00555 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1AO00555 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CACNA1AO00555 AC105265.2-201ENST00000467189 838 ntBASIC23.61■■□□□ 1.37
CACNA1AO00555 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CACNA1AO00555 LSM4-201ENST00000252816 986 ntTSL 2 BASIC23.6■■□□□ 1.37
CACNA1AO00555 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CACNA1AO00555 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC23.58■■□□□ 1.37
CACNA1AO00555 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CACNA1AO00555 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.58■■□□□ 1.37
CACNA1AO00555 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CACNA1AO00555 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CACNA1AO00555 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CACNA1AO00555 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC23.58■■□□□ 1.36
CACNA1AO00555 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.58■■□□□ 1.36
CACNA1AO00555 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CACNA1AO00555 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.57■■□□□ 1.36
CACNA1AO00555 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CACNA1AO00555 EDA-201ENST00000338901 1233 ntBASIC23.57■■□□□ 1.36
CACNA1AO00555 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CACNA1AO00555 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CACNA1AO00555 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CACNA1AO00555 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CACNA1AO00555 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.56■■□□□ 1.36
CACNA1AO00555 ID1-201ENST00000376105 1233 ntBASIC23.56■■□□□ 1.36
CACNA1AO00555 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.56■■□□□ 1.36
CACNA1AO00555 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.56■■□□□ 1.36
CACNA1AO00555 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.56■■□□□ 1.36
CACNA1AO00555 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CACNA1AO00555 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.56■■□□□ 1.36
CACNA1AO00555 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC23.55■■□□□ 1.36
CACNA1AO00555 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CACNA1AO00555 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.55■■□□□ 1.36
CACNA1AO00555 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC23.55■■□□□ 1.36
CACNA1AO00555 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.55■■□□□ 1.36
CACNA1AO00555 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
CACNA1AO00555 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
CACNA1AO00555 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
CACNA1AO00555 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
CACNA1AO00555 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CACNA1AO00555 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CACNA1AO00555 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.53■■□□□ 1.36
CACNA1AO00555 AC010997.5-201ENST00000609182 354 ntBASIC23.53■■□□□ 1.36
CACNA1AO00555 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CACNA1AO00555 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CACNA1AO00555 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
CACNA1AO00555 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.52■■□□□ 1.35
CACNA1AO00555 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
CACNA1AO00555 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.51■■□□□ 1.35
CACNA1AO00555 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CACNA1AO00555 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CACNA1AO00555 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
CACNA1AO00555 AL355001.2-201ENST00000620617 1191 ntBASIC23.51■■□□□ 1.35
CACNA1AO00555 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
CACNA1AO00555 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CACNA1AO00555 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CACNA1AO00555 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CACNA1AO00555 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CACNA1AO00555 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.5■■□□□ 1.35
CACNA1AO00555 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1AO00555 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CACNA1AO00555 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.49■■□□□ 1.35
CACNA1AO00555 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.48■■□□□ 1.35
CACNA1AO00555 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.48■■□□□ 1.35
CACNA1AO00555 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.48■■□□□ 1.35
CACNA1AO00555 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
CACNA1AO00555 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.48■■□□□ 1.35
CACNA1AO00555 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.48■■□□□ 1.35
CACNA1AO00555 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1AO00555 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.47■■□□□ 1.35
CACNA1AO00555 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
CACNA1AO00555 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1AO00555 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1AO00555 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1AO00555 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CACNA1AO00555 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.47■■□□□ 1.35
CACNA1AO00555 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.47■■□□□ 1.35
CACNA1AO00555 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
CACNA1AO00555 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1AO00555 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CACNA1AO00555 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1AO00555 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CACNA1AO00555 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.44■■□□□ 1.34
CACNA1AO00555 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CACNA1AO00555 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
CACNA1AO00555 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.43■■□□□ 1.34
CACNA1AO00555 MIR939-201ENST00000401314 82 ntBASIC23.43■■□□□ 1.34
CACNA1AO00555 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.43■■□□□ 1.34
CACNA1AO00555 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.42■■□□□ 1.34
CACNA1AO00555 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.42■■□□□ 1.34
CACNA1AO00555 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.42■■□□□ 1.34
CACNA1AO00555 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.42■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms